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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttattgatttgtttgttatgtggaacttattttgtagtcaatgtctcacaatgcacttgcactcatttattatgatattatttt...

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttattgatttgtttgttatgtggaacttattttgtagtcaatgtctcacaatgcacttgc-----actcatttattatgatattatttt----
|| ||| | || |||||||||||||||||||||||||| || || || ||||| |||||||| |||||  | ||||| ||||||    || || ||   || | | | |||    | || | |||   |  |||| |||    ||| |||        |   ||  |  |||  |||  |    
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatat----gattttttttcttttctataatg----atttttgttgctttacatgtatcatt-cgcatttgttggatgttttgttgctgggatggtatgataacg

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 5
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttattgatttgtttgttatgtggaacttattttgtagtcaatgtctcacaatgcacttgcactcatttattatgatattatttt----
|| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||  | |    |||    ||      || |     || ||  ||    ||| |||  | | |||  | || | |||| |  |||   ||| ||||    
ATCTGCAGAGCGCTTGCGTATATACATAATTGCATTGGTATTTGTCACCGTGACATCAAGCCTCAGAACTTACTTgtaagattctcccttcttacgagttgaggatttgttacttacataccttt---tcagtgtaactctatggtcatgaattcatgttgtatc-catttttttgcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047783|gb|CA784461.1|CA784461
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|26048721|gb|CA785174.1|CA785174
EST:     ATAACTGCATTGGTATATGGCATCGTGACATCAAACCTCAAAACCTACTT                         GTGAACCCACACACTCATCAACTGAAACTATGTGATTTTGGG
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGG