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CGGCATTGTGAAGCTAGAAGATGCCAATGATGCAGGTGGAAGGAACTCAGAGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatcattagaaagaaaggcccttgtccattttatacatttctgcaaaccctaataatattctttaactactattgaaaatttagaagccaatga...
species | Glycine max |
transcript | GLYMA15G43170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCT ATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGTGTTTCCATTGEST: gi|207745774|gb|GD720986.1|GD720986
genomic: AAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatc ... ttatatgaagATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGTGTTTCCATTG
EST: AGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCT ATGGCTGGCCTCTCTGTTGTGGGTCEST: gi|193597278|gb|FK554494.1|FK554494
genomic: AGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatc ... ttatatgaagATGGCTGGCCTCTCTGTTGTGGGTC
EST: AGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCT ATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGTEST: gi|193640086|gb|FK592359.1|FK592359
genomic: AGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatc ... ttatatgaagATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGT
EST: CCTTGATACTAACAGAGGGAGATTCTGCTAAGGCCCTTGCT ATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGTGTTTCCATTG
genomic: CCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatc ... ttatatgaagATGGCTGGCCTCTCTGTTGTGGGTCGAGATCATTATGGGGTGTTTCCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCATTGTGAAGCTAGAAGATGCCAATGATGCAGGTGGAAGGAACTCAGAGAAGTGCACCTTGATATTAACAGAGGGAGATTCTGCTAAGGCCCTTGCTgtaagttatcattagaaagaaaggcccttgtccattttatacatttctgcaaaccctaataatattctttaactactattgaaaatttagaagccaatga
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaaa