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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtcccttactctatcatttttaaatttgtgcatcatttagatttcattttgtggcactatttatatacactaaaaaatgtatggtttccgtttggtcattgcag

Basic information

species Glycine max
transcript GLYMA15G40590.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 5'ss of exon 5
GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtcccttactctatcatttttaaatttgtgcatcattta--gatttcattttgtggcactatttatatacactaaaaaatgtatggtt-tccgtttggtcattgcag--------------------------
|| || || ||||| ||||||||||| || |||||||| ||||| ||||||||||| |    || ||| ||  |  ||  |  |||  ||   |||   ||| | |     |      |||||  |      |   ||| ||||  |  |  |       |  |                          
GAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATgtaagctatttcctcaattgtcgtttgagctgtttattgcttattaattacctgcatggaggtcgtttatggatgtgttattttgtttggtggtgtgcctaactgaagttgaatccgtgggtgatgcatatttacag

upper sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G872417_T01 (Zea mays), 5'ss of exon 5
GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtcccttactctatcatttttaaatttgtgcatcatttagatttcattttgtggcactatttatatacactaaaaaatgta-tggtttccgtttggtcattgcag-
|| || || |||||||||||||||||| | ||||| |||||||||||||||||||| |    ||  ||  |    |||  | || |      ||     ||| || ||  |  |  ||| | |    | || |||| | | |||| |        | |  || 
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttcatccgtgtcctttggagtttt----tgtt---gcttccttctgaaggccattttctgt-tgttcaataatgcactcgttttcag--aaatactaaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927651|gb|BU544790.1|BU544790
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|192300038|gb|FG992191.1|FG992191
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTTTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|193496721|gb|FK460305.1|FK460305
EST:     GGTGTACAACAACATGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|208303248|gb|GE101069.1|GE101069
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|151399825|gb|EV269696.1|EV269696
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|298199205|gb|HO042568.1|HO042568
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|192300037|gb|FG992190.1|FG992190
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|7285928|gb|AW598415.1|AW598415
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|151395293|gb|EV265164.1|EV265164
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|192310890|gb|FG998894.1|FG998894
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
EST: gi|192310889|gb|FG998893.1|FG998893
EST:     GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT                         AAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC
genomic: GGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtccct ... gtcattgcagAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTC