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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgttattattttttaacatccttcatatttaattataactttacatggtatgttatgcag

Basic information

species Glycine max
transcript GLYMA15G40110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgttattattttttaacatccttcatatttaattataactttacatggtatgtta-tgcag--------------
||| |||||||| ||||| ||||||||||| || || ||||||||||| |||||||| ||||||||||| |||||| | || || |||||||| || ||||| |||    |    |  |||  ||||  |    | | |   |||||    | |  ||||  |     || | |||   ||| || ||  |              
TCTCTATGTTGTTGAGGGAATGCAATTTGATCGCGGCTATATTTCTCCCTACTTTGTAACTGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGgtttgatgcattctagaattcggtgtacttaa--actgtgcattaaccagatactcatttg-tgggctctatgcatttgatgctaatgttgattctatcacccag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgt--tattattttttaacatccttca-tatttaattataactttacatggtatgttatgcag
||| |||||||| ||||| ||||| ||||| ||||||||||| || || || ||||| |||||||| ||||||||| | |  |||||||||||||| |||||    | |  | |||    | |     | ||   |||  |  |||||  |  |||| | | | |||  | || |   |    | || | |||
TCTCTATGTTGTGGAGGGAATGCAGTTTGAACGTGGTTATATCTCCCCGTATTTTGTAACTGACAGCGAGAAAATGTCTGCAGAATATGAGAACTGCAAGgta--gcttcagcctgagcacacatacccctgctgtatgctgctttaatctgtttcagtttcttattgca-ctatgtttccactatttttcag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtct-----gttttccctgtaacttgttattattttttaacatccttcatatttaa-----ttataactttacatggtatgttatgcag-------
 || |||  ||| ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||||| | || || ||||||||||| ||||| |||   |   ||      || | |    || |   || |  | | ||  |       | ||||       | ||   ||||   |  | | || |         
CCTCTATTCTGTTGAGGGAATGCAGTTTGACCGTGGCTATATTTCTCCCTACTTTGTGACTGACAGTGAAAAAATGACAGTCGAGTATGAGAACTGCAAGgtttgatgctccccttcatcattgtactaaaaattctgtagtgctatctagtaatagcagtttttatgacttctgtacgcttacggtgattttaattctattaccag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 5
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGg----tgtgacatttg---tctgttttccctgtaacttgttattattttttaacatccttcatatttaattataacttt--acatggtatgttatgcag---------------------------------------------------------------------------------
||| |||||||| ||||| |||||||||||||||||||| || ||||| |||||||| || ||||||||||||||| | |  || || |||||||| ||||    ||| | || ||   | |   |||  | |   ||| | ||  ||  |  | |  |||| |   ||  | ||  |   || |  |  |   ||  |                                                                                 
TCTCTATGTTGTGGAGGGAATGCAATTTGACCGTGGTTACATCTCTCCGTACTTTGTAACAGACAGTGAGAAAATGACTGCAGAGTACGAGAACTGCAAGgtaactgtaaaatatgagatatcaattcttttttttttgctgtttattgctttcctgtttcaaaagaaaaaaaaaactctgacctattggggggtgggggtaagacagttcctaggcaaacagcagttgctttcctgtttcagactattaatgctattgtctttcatcttcattgttcag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgttattattttttaacatccttcatatttaattataactttacatg-gtatgttatgcag-------------------------
 || || || || || || ||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||| |||| || |  || || || |||||  ||  ||| |    | |   |  ||  ||   ||  ||   |   |  ||      |||  |||  | || ||| ||||   |   |                          
CCTCTACGTCGTAGAAGGAATGCAATTTGACCGTGGTTATATCTCTCCTTACTTTGTGACAGACAGCGAGAAAATGTCCGTCGAGTTCGACAATTGCAAGgta-gatgtttcttgaatctgagtagaagatgaattttgttggcagactatttagccactaaagatatttatatatgagtataacaacgatctttaatgttttggtatgattgcag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgttattattttttaacatccttcatatttaattataactttacatggtatg-ttatgcag
 || || ||||| || || ||||||||||| ||||||||||| ||||| |||||||| || |||||||||||||||   |  |||||||||||||| ||||| | |   |||| | |    |   ||| |  | ||   |  | || | ||    |||||  | |  |  |  |      || || || ||
CCTTTACGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTGTGCAGAATATGAGAACTGCAAGgtattattattgtttata---cagttaaatcttaatagctgataaaaaaccgcagtattttttgactatatgtctcttcttgcttttgtag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgt-tattattttttaacatccttcatatttaattataactttacatggtatgttatgcag
 || |||||||| || || ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||| | ||||| ||||| || || |||||     |||| ||| | |||   |  ||     |  |||| |    ||     | ||   | ||   ||| | ||               
CCTTTATGTTGTGGAAGGAATGCAATTTGACCGTGGTTATATCTCCCCATACTTTGTGACAGACAGTGAGAAAATGTCTGTTGAGTATGACAATTGCAAGgta----atttttctttattctgagctaccaaaatgatattgtgatgcaaatagcctaacaagtttctactgtgcag--------------

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 6
TCTATATGTTGTCGAGGGGATGCAATTTGACCGTGGTTATATTTCTCCATACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatttgtctgttttccctgtaacttgttattattttttaaca---tccttcatatttaattataactttacatggtatgtt-atgcag
 || |||||||| || || ||||||||||||||||||||||| || || |||||||| || || |||||||||||||| |||||||  |||||||| ||||| ||   ||    | |  |    |  |  |  |||  |  ||   ||   |  ||| |  |   ||   |  | |||   | |||| ||| ||
CCTGTATGTTGTTGAAGGAATGCAATTTGACCGTGGTTATATCTCACCTTACTTTGTCACCGATAGTGAGAAAATGGCAGTTGAATTCGAGAACTGCAAGgtttgcatttctcttataatttaggagagctaatatggtacttctgcaagttggttctttctggctttctaactgacaaattttgttcatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209696896|gb|BW660461.1|BW660461
EST:     ACTTTGTTACTGACAGTGAGAAAATGGCTGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|208194397|gb|GD987652.1|GD987652
EST:     ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|26046015|gb|CA783382.1|CA783382
EST:     AGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: AGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|24135545|gb|BU926055.1|BU926055
EST:     ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|193539802|gb|FK493788.1|FK493788
EST:     ATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|193404242|gb|FK366576.1|FK366576
EST:     ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|24136477|gb|BU926987.1|BU926987
EST:     ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
EST: gi|208221819|gb|GE016841.1|GE016841
EST:     ACTTTGTTACTGATAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAG                         TTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA
genomic: ACTTTGTTACTGACAGTGAGAAAATGGCCGTTGAATATGAGAACTGTAAGgtgtgacatt ... tgttatgcagTTGCTGTTAGTTGACAAAAAGATAACCAATGCAAGGGATCTTATCAACATA