Sequence
atgc intronic sequence ATGC exonic sequenceGATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
Basic information
species | Glycine max |
transcript | GLYMA15G37490.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 5'ss of exon 4
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
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GCCCAGCTTGAGAAGATTGCTCCAACTTGGATGAATATTTCGTTGAAAATGAAAGAGGATGTGGAGACAGACAAAGCTTTTGGATGGGTCTTGGAAATgtcggtactattatgtgtacagtatttcttcttgactta-aacatgcacaccccttattaatttgatctttcatattcatgtttatag---------------
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
--GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
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ACAATTC--TTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgt--------gcaagttctta----tgttcacttattacattattacaattccag------------------
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G035595_T01 (Zea mays), 5'ss of exon 4
--GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
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ACAATTC--TTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgt--------gcaagttctta----tgttcacttattacattattacaattccagccttctt-tgacctttag
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G035595_T04 (Zea mays), 5'ss of exon 1
----GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
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AGACAATTC--TTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgt--------gcaagttctta----tgttcacttattacattattacaattccagccttctt-tgacctttag
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaa-----ctgatagatatttttgttctagaagaggtattggaactgataatt--tgatacattatgctaatggtttttttcttgtggaaccaag
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GAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgt-tagcacaagaaacaagaatcttaaatcatgaattggctctccac---cttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataag-
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 4
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtctta---ccaaacaactgatagatatttttgttctagaagaggtattggaactg--ataatttgat-------acattatgctaatggtttttttc--ttgtggaaccaag
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GAGTTGTTGGAGAAGATTGCGCCTACATGGATGAATGTTTCTTTGAGAATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaag
upper sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
lower sequence: PP1S145_88V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagat------atttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag---------------
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AGTCAACTAGAGAAGATAGCTCCAACATGGTCTGACGTGTCCATCAAGATGAAAGATGACCCAGAAACTGACAAAGCATTTGGTTGGGTTCTGGAAATgtgcgtgaaatttcaaccttggtagtctgcgcaagtttctgtctggtagttagcctagtac--attgtttgtcgcctctttgctgtgctttggctaatttggaggatgtgcattgtatgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192294296|gb|FG986385.1|FG986385EST: ATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAAT GTATGCTTATGCTGGTGCATCTGCTGTGCATGGTG
genomic: ATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtctta ... tggaaccaagGTATGCTTATGCTGTTGCATCTGCTGTGCATGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA