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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAGgtacgcacatataagcattcaggcactcattttgtttaagtatttaagaaagtaatttttagctaagtttaagaagttttacggtgaaagttatttaagt...

Basic information

species Glycine max
transcript GLYMA15G34620.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G34620.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAGgtacgcacatataagcattcaggcactcattttgtttaagtatttaagaaagtaatttttagctaagt--ttaa-gaagttttacggtgaaagttatttaagt
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GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgta---acattcaatc-ctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662175|gb|BI699546.1|BI699546
EST:     GGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAG                         CTCATAAGAGCCATTCTAGAAAACCCTAAGGACAAAACGAAGGTGAACCTT
genomic: GGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAGgtacgcacat ... tttcttgcagCTCATAAGAGCCATTCTAGAAAACCCTAAGGACAAAACGAAGGTGAACCTT
EST: gi|151411830|gb|EV281641.1|EV281641
EST:     GGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAG                         CTCATAAGAGCCATTCTAGAAAACCCTAAGGACAAAACGAAGGTGAACCTT
genomic: GGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAGgtacgcacat ... tttcttgcagCTCATAAGAGCCATTCTAGAAAACCCTAAGGACAAAACGAAGGTGAACCTT