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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGgttttttaccaacttaaagttctagtaatttattctttcattgattgaatgccctgacattattattctcttggcttttaattcttctacatcccag

Basic information

species Glycine max
transcript GLYMA15G23420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 5
ATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGgttttttaccaacttaaagttctagtaatttattctttcattgattgaatgccctgacattattattctcttggcttttaattcttctacatcccag---
||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||  |||| || ||||||||||||||||| || || || || ||||||     | || || | |||| ||  | || |   |   ||  |||| |  |    |||  |||| ||| ||  ||||  || |  | | | |||    
ATCTTACTATGACATCCGTGCTGCGCGAACTGCTATGCGTGCATTACAAAACAAGCCATTGCGACGGAGGAAACTAGACATTCACTTTTCAATTCCGAAGgtt-----caaaattgacgttc-agccacttgtaagtcattt--ttgactttcaaaccatctttatactcatgttttttccttttcttgcctaccaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254337513|gb|GR845190.1|GR845190
EST:     ACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAG                         GATAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAAT
genomic: ACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGgttttttacc ... tacatcccagGATAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAAT
EST: gi|193677718|gb|FK617464.1|FK617464
EST:     ACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAG                         GATAATCCATCAGACAAGGATATAACAAAACCAGGGAACATTG
genomic: ACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCTATACCAAAGgttttttacc ... tacatcccagGATAATCCATCAGACAAGGATAT--CAA--CCAGGGAACATTG