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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAGGAAAAGATTTTGTATAAATTGATATCTGGTCTTCACTCCTCCATATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcccattcctcttttccgcaatagcttgttttttgtttgaaaggaatatttgtattgcttttgatgaattaatacatttattgcatatttgag...

Basic information

species Glycine max
transcript GLYMA15G23150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23150.3 (Glycine max), 5'ss of exon 5
lower sequence: AT2G38960.2 (Arabidopsis thaliana), 5'ss of exon 5
CCAAGAGGAAAAGATTTTGTATAAATTGATATCTGGTCTTCACTCCTCCATATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaa-atctcccattcctcttttccgcaatagcttgttttttgtttgaaaggaatatttgtattgcttttgatgaattaatacatttattgcatatttgag
|||||| || ||||| ||||| |||||| | |||||||||||||| ||||| ||| ||||||| ||||| |||||| ||||||| ||||||||||| ||||||| |||| || | |   | |  |  |   |  || | | | |||   | | | || |  | ||  |      ||  | ||| ||| ||   ||||| ||
CCAAGAAGAGAAGATCTTGTACAAATTGGTTTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACTTGATGAAGCTACAAACTTGgtaagatctgccgtacgaatctgacttatctg--tgatatgtatttcttaagcagatatagaatgactc-----aaagactac-ttttttttgtatttcag

upper sequence: GLYMA15G23150.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g03950.t01 (Vitis vinifera), 5'ss of exon 5
CCAAGAGGAAAAGATTTTGTATAAATTGATATCTGGTCTTCACTCCTCCATATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcccattcctcttttccgcaatagcttgttttttgtttgaaaggaatatttgta-ttgcttttgatgaattaatacatttattgcatatttgag-------
 |||||| | || || ||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| | ||||||||||    ||||         |   ||||   |  | | | || |||    ||||  |     |  |||| |||||  |   ||| | || |  ||  | ||||| |          
TCAAGAGAAGAAAATATTGTACAAATTGATATCTGGTCTTCACTCCTCCATATCAGTCCATATAGCTGCTGATTATCTGCTTAATGAAGCTACAAGCACGgtat--------tggttcttgctcatagttgtttatttaaactttgggaatggaaaatgtacttgctccttgcgaaattatgccctttattcatatgtccttaacaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814993|gb|BI787268.1|BI787268
EST:     TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTG                         TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
EST: gi|15815000|gb|BI787275.1|BI787275
EST:     TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTG                         TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
EST: gi|6914968|gb|AW396498.1|AW396498
EST:     TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTG                         TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
EST: gi|57575810|gb|CX548781.1|CX548781
EST:     TATCAATTCATATAGCTTCTGATAATCTACTTGAGGAAGCTACAAATTTG                         TGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT
genomic: TATCAATTCATATAGCTTCTGATTATCTACTTGAGGAAGCTACAAATTTGgtaaatctcc ... attattccagTGGGGACAAAATCTTACTTTGATGTATGACCGAGTCCTAAGATACCCTGAT