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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGgtaacgagtctcatttttttttggaactaattgtattttatgcatgttgtttatttttaaattgttatttattagttgctgaagattagtattttgtggt...

Basic information

species Glycine max
transcript GLYMA15G22520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G22520.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 5'ss of exon 8
TTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATTTTTAGAGgta---acgagtctcatttttttttggaactaat---tgtattttatgcatgttgtttatttttaaattgttatttattagttgctgaagattagtattttgtggt
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GTATGTGCTAGGAGCTGTAGAAACCTTTTTGGATGCAGTTCCTTCTGCTGGTTTTTTTAAAGgtaggaacaacttacaagtaatactatagtcagtaagtttactttatgtttgtgaggatggtagaaaaaatggaacagta-tacttcaagccttttgttag-----