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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaacataaggttatggaaaatgctaagtggctcgttatctttttgtttacatgctgttgaaatatacatgatatttaattgcag

Basic information

species Glycine max
transcript GLYMA15G20400.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G167868_T01 (Zea mays), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaata------------aaacataaggttatggaaaatgctaagtggctcgttatctttttgtttacat-------gctgttgaaatatacatgatattta-attgcag
 |||||||| ||||| || ||  |||| || ||||||||  | || ||||| ||| |||| || ||||||||||||||||| || ||||||||  |||||||||||             | | ||| ||       ||  |||| |    |    || | ||   |  |        |||       |||||||  | ||||   | |||
TAAGTACTTTGTTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGAGAGAATTATGAAAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatgaaatctaaattttacaacgtcatatttcatgaacagctaaagctaacaggctatacatcttgtttatgattcag

upper sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G007871_T02 (Zea mays), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaat------------aaaacataaggttatggaaaatgctaagtggctcgttatct-ttttgtttac-----atgctgttgaaatatacatgatattta-attgcag
 || |||||| |||| || ||  |||| || ||||||||  | || ||||| ||| ||||||| |||||||| |||||||| || ||||||||  ||||||||||            | | | ||| ||       |  ||||| |    |   |  | ||   |  ||     | |||   |    ||||||  | ||||   | |||
TAAATACTTCATTGAATATATATCCAAGGCATATCAAGCATTAACTGATCCTATATCTCGTGAGAATTATGAGAAATATGGTCACCCTGATGGGCGGCAGgtaatattagcatcattagatcctaatgtctcaatcagagctaaattttgcaacacatgttccatgaactgctaaagctaacgggtaatacatcttgtttatgattcag

upper sequence: GLYMA15G20400.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 5'ss of exon 4
CAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaa--cataaggttatggaaaatgctaagtggctcgttatctttttgtttacatgctgttgaaatatacatgatattt----aattgcag-------------------
||| || || || |||| |||  | || |||||||| ||||| |||||||||||  | ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||   |   | | || ||||     |   | | |  ||| ||     |  | |  || || | | | | || || |||    || || |                    
CAAATATTTTGTGGAGTTCATATCTAAGGCTTATCAGGCTCTCACAGATCCAATCTCACGTGAGAATTATGAAAAGTATGGCCATCCTGATGGTAGGCAGgtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttata-agaaatcatgtttctgaaactgaatgtactatctgttgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306292|gb|FG996878.1|FG996878
EST:     CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG                         GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
EST: gi|11274682|gb|BF325019.1|BF325019
EST:     CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG                         GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
EST: gi|27426194|gb|CA937714.1|CA937714
EST:     CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAG                         GGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG
genomic: CAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... ttaattgcagGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGG