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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaagttcaactacattgattctcatggttcattacctgcaccatggttcttaatatttgcaaatccacttcag

Basic information

species Glycine max
transcript GLYMA15G18170.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 4
ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtg----aaagttcaactacattga----ttctcatggttcattacctgcaccatggttcttaatatttgcaaatccacttcag---------
|| || ||||| || ||||||||||||||| |||| ||| |||| ||| | || ||||| ||||||||||| || |||||||||||     |   ||    |   || |     | | |    ||   || || |   |  |  ||  || | | |  |  | ||||          
ATATTCAATGGGGTGTTTCTTAAAGTGAACGAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGgtaagtatctcactctttgtttttcttaaaatcctataaaaagtctaaacttgtatagtattcatttgtaat-gtatttatatttcaaatattttag

upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 5'ss of exon 4
ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaagttcaactacat-tgattctcatggttcattacctgcaccatggttct-taatatttg---caaatccacttcag---------------
|| || ||||| || |||||||||||||||||||| ||| |||| | | | || ||||| ||||||||||| || |||||||||||   |  ||| |    | |  |||| |   | |  ||      | |   || | || ||||     | |||  | ||                  
ATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACAAGTTGCACAGGGTTGAGCCTTATGTGACTTATGGgtaagt---atctcacccttttgtttttcttaaaatcctataaaaagtctaaacttgtatagtattcatttctaatgtatttatattgcaaatattttag

upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 5
ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtg----aaagttcaactacattgattctcatggttcat-----tacctgcaccatggttcttaatatttgcaaatccacttcag
|| |||||||| |||||||| ||||| ||||| || ||| |||||||||| || ||||| ||||||||||| || || ||||| |||     |    ||||| |||  |   ||| || ||||      || ||||   || || || ||||    ||      |||||
ATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGGgtatgtgttctgactgccaacttcat-aaccttcagggatcatatctccacatgcaatctg-ttattcatatactgaagattgtttcag

upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 5'ss of exon 5
ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaagttcaactacattgattctcatggttcattacctgcaccatggttcttaatatttgcaa-atccacttcag--------------------------
|| || ||||| || |||||||||||||||||||| ||| |||| ||| | || ||||  ||||||| ||| || |||||||||||     |   |||   ||| || ||    || |   |||  |  |  ||||| ||  | || |  || || |||                            
ATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGGgtaagt----atcttactcttttgtttttc----ttaaaatcctataaaa-agttctgaacttgtgtattattcatttctaatgtatttatattgcaaatattttag

upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 4
ATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaagttcaactacattgattctcatggttcattacctgcaccatggttcttaatatt-tgcaaatccacttcag--------------------
|| || ||||| || |||||||||||||||||||| ||| |||| ||| | || ||||| ||||||||||| || |||||||||||     |   |||   ||| || || |       ||     |   |     |  ||||| | ||  || | |  |                     
ATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGgtaagt----atctcactcttttgtttttcttaaaatcctataaaaagtctaaacttgtatattattcatttctaatgtatttatattgcaaatattttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282865|gb|BE020426.1|BE020426
EST:     AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG                         GTACCCTAATTTGAAGAGTGTTAGGAGAATTGATCTACAAGAGGGGCTATG
genomic: AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaa ... tccacttcagGTACCCTAATTTGAAGAGTGTTAG-AGAATTGATCTACAAGAGGGGCTATG
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG                         GTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGG
genomic: AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaa ... tccacttcagGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGG
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGG                         GTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGG
genomic: AAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGgtaagtgaaa ... tccacttcagGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGG