Sequence
atgc intronic sequence ATGC exonic sequenceAGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcactttctgcttatgttcatgccatctttttcacattgaggatacatcttttcttctagtacctaccactctaaaagcttttgagaa...
Basic information
species | Glycine max |
transcript | GLYMA15G15010.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g19450.2 (Oryza sativa), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcactttctgctta---tgttcatgccatcttt-ttcacattgagga-tacatcttttcttctagtacctaccactctaaaagcttttgagaa
||| |||||||| || ||||| || || |||||||| |||||||| || ||||| |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| | ||||| ||| || | | |||| | | | || || || | | || ||| || | | | | |||| |||| | |
AGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCATTGACAACATTATTCAATGCAAGCTTTACAGGCCTGGATCTGTTGGCTTTGTTTCTAAATCGgtatgcatttatttgatttttgttaaagttgtttgtacaaaagaaatttaccttccgtactatttctgatccataaaaaggcaatattcta----tttttaaaa-
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G033226_T01 (Zea mays), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcactttctgcttatgttcatgccatctttttcacattgaggatacatcttttcttctagtacctaccactctaaaagcttttgagaa
||| |||||||| || ||||| || || |||||||| ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| |||||||| ||| | | | || | | || | | ||| | | || | |
AGCTGGTGCTTTCAAGATTGGTGATACCGCTGGAACCATTGATAACATAATTCAGTGCAAGCTTTACAGGCCTGGATCTGTTGGTTTTGTGTCTAAATCGgtac-tgcctttataccattctttcattatttggtttgcttgtctatatacaacag--------------------------------------------
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G06650.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagt-tattcactttctgcttatgttcatgccatctttttcacattgaggata-catcttttcttctagtacctaccactctaaaagcttttgagaa----------
||| || || ||||||||||| |||||||||||||| ||||||||||| || || |||||| | || ||||| ||||||||||| ||||| || ||||||||||| | | | | | | || | || ||| | | | | || | |||||| | || | | || || | |
AGCTGGAGCCTTTAAAATTGGTGACACAGCTGGAACTATTGACAATATCATCCAATGCAAGTTGTACAGGCCTGGATCTGTTGGCTTTGTCTCAAAATCTgtatgagctgtggagattgtttttttcgcattttgtagtctacctaagctcatgattatcctcttttgaatcttaatctgagagtttatttctcattcactattttctatag
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G49460.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcactttctgcttatgttcatgccatctttttcacattgaggatacatcttttcttctagtac-ctaccactctaaaagcttttgagaa
||| || || ||||| ||||| || || || ||||||||||| || || || || |||||||| || || || ||||||||||| ||||| || |||||||||||| | ||| | || || |||| | |||| |||| | | ||| | ||| || | || ||
AGCTGGAGCCTTTAAGATTGGTGATACTGCAGGAACAATTGATAACATTATCCAGTGCAAGCTATACAGACCTGGATCTGTTGGTTTTGTCTCCAAATCTgtatgtgctgattttgcaaaatttcataatc-tgcc-taaagctcactttgatgtctgagagttttattcgttactcttcttttcccgcag----------
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0077g00950.t01 (Vitis vinifera), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcact---ttctgcttatgttcatgccatctttttcacattgaggatacatcttttcttctagtacctaccactctaaaagcttttgagaa
||| || || ||||| || || ||||| || ||||||||||| ||||| ||||| | ||| || || ||||| || |||||||| ||||| |||||||||||| ||| |||||| | | | || || || |||| ||| | | | | | | | | | | | | | || |||
AGCTGGAGCCTTTAAGATAGGGGACACTGCAGGAACAATTGATAATATCATTCAGTCCAAACTTTACAGGCCTGGCTCTGTTGGTTTTGTTTCTAAATCTgtacgtatttattcgttgaactttatttgctttgattccatatttcttatgtaaaaaacctggttctagccttcactgaaatgaatatggtaactggtga---
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S46_63V6.2 (Physcomitrella patens), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattc-----actttctgcttatgttcatgccatcttttt-cacattgaggatacatcttttcttctagtacctaccactctaaaagcttttgagaa
|| ||||| || |||||||| || || || || || | |||||||| |||||||||||||| ||||| || ||||||||||| ||||| |||||||| ||| | | | ||| || | || | | | || | || | | | || | | || | | || || | || | |
GGCTGGTGCATTCAAAATTGGTGATACTGCAGGCACGTTGGACAATATCATTCACTGCAAGCTTTATAGACCTGGATCTGTTGGGTTTGTGTCTAAATCAgtaagcacgttttcctcgtacccattcttttagataaggctgcagtgaaacatgtgcatggcacgtttgctcgtgaattaactgagtgttcaagacagct------
upper sequence: GLYMA15G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S35_384V6.1 (Physcomitrella patens), 5'ss of exon 6
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatg----------tagttattc-actttctgcttatg--------ttcatgccatct---ttttcacattgaggatacatcttttctt------ctagtacctac----cactctaaaagcttttgagaa----------------------------------------------------------
|| ||||| || |||||||| || ||||| || ||| | ||||| || || |||||||| || || || || ||||| |||||||||||||||||||| ||| | | ||| | ||||| | | ||| || || || | | | || | | | || || | | | || | || |||| |||| || | |
GGCTGGTGCATTCAAAATTGGTGATACAGCCGGCACATTGGACAACATCATCCACTGCAAACTTTACAGACCTGGATCCGTTGGATTTGTATCTAAATCAgtacgatcacctaccttactatacgacttttcgatcatgggtgttgattggtgtcaattgagtagttgcaaaaggaaaggacctgcatttggcgagcaaaaatcttcaactcattctaggagctgtttatattggagtgtatctgtgcacaagggttttcactaattagacttcgtgtattgttgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26058182|gb|CA801096.1|CA801096EST: TTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCT GGGGGGATGTCCAATGAATTATATAACACTATCGCCC-CGTAACTGATGGG
genomic: TTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagtt ... attattacagGGGGGGATGTCCAATGAATTATATAACACTATCGCCCGCGTAACTGATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTgtatgtagttattcactttctgcttatgttcatgccatctttttcacattgaggatacatcttttcttctagtacctaccactctaaaagcttttgagaa
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