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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctgatttccataaattttgcatttcttggtaaatcttaataaaatctatcatctatgaatatgtctctagacttttaaatgtcat...

Basic information

species Glycine max
transcript GLYMA15G14390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 4
TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctgatttccataaattttgcatttcttggtaaatcttaataaaatctatcatctatgaatatgtctctag--acttttaaatgtcat
||||| | |||||||| || ||||| |||||||| ||||| ||||    ||| || |||||||| || ||||||||||||||||||||||| ||||||||||   |||   | | ||||  |       |||||   |  |   |   | ||    || ||||| || ||||  |     ||| |  |||||| ||      
TTGATATGTGGTCAGTTGGTTGTATCTTTGCAGAAATGGTGAACCAGAAACCACTGTTCCCTGGTGATTCTGAGATTGATGAATTATTTAAGATATTCAGgttc-tattattgtactgagattacctttttttgttctgttaattgtgtttttgccaactctatgatttatgtgttgtgttctggttacttttgaag-----

upper sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 5
TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctgatttccataaattttgcatttcttggtaaatcttaataaaatctatcatctatg-aatatgtctctag--acttttaaatgtcat
||||| | |||||||| || ||||| |||||||| ||||| ||||    ||| || |||||||| || ||||||||||||||||||||||| ||||||||||   |||     | ||||  |       |||||   |  |   |   | ||    || ||| | || ||||   | ||| ||| |  |||||| ||      
TTGATATGTGGTCAGTTGGTTGTATCTTTGCAGAAATGGTGAACCAGAAACCACTGTTCCCTGGTGATTCTGAGATTGATGAATTATTTAAGATATTCAGgttc-tattatcgtactgagattacctttttttgttctgttatttgtgtttttgccaactctctgatttatgtggtgtgt-tctggttacttttgaag-----

upper sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 5
TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctgatttccataaattttgcatttcttggtaaatcttaataaaatctatcatctatgaatatgtctctag-acttttaaatgtcat
||||||| ||||| ||||| ||||| ||||| || ||||| |||| |   || ||||||||||| || |||||||| || ||| | ||||| ||||||||||   |||   | | |||   |   |||||||   |||   |  |      |  || |         || ||  | ||||  |   |||  | ||      
TTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttc-tatgattgtgctggcat---taaatttcttattctgtatttgcgtattttagacctgtctgactttgtttgtgtcattgccactgctgaag-----

upper sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 6
TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctgatttccataaattttgcat---ttcttggt-aaatcttaataaaatctatcatctatgaatatgtctctagacttttaaatgtcat
||||||| ||||| ||||| ||||||||||| |||||||| ||||  |||||  | || ||||||||||| |||||||||||||| || || || |||||||   || | || |  |  |||   |    |||  ||    ||||| | | |  || | ||    |    | ||| ||| | ||  |||||||| || | |   
TTGATGTGTGGTCTGTGGGCTGTATATTTGCTGAGATGGTGAACCAGCGACCATTGTTTCCTGGGGACTCGGAGATTGATGAATTGTTCAAGATCTTCAGgtgt-taaccatgttgtacttttttttttctttctatagcctcttgattagaagttgaaaagccatgctctttataaat-tttcagtagactttgaagtttg--

upper sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S281_23V6.1 (Physcomitrella patens), 5'ss of exon 6
TTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatctatttcctg-atttccataaattttgcatttcttggtaaatcttaataaaatctatcatctatgaatatgtctctagacttttaaatgtcat-
| || || ||||| || ||||| ||||| || || ||||| |  | | | ||||| |||||||| || || ||||||||||| ||||| | |||||||||||| |        ||||| || | ||   |  || |  |   ||| || |   ||     |   | || | | | | |    | | |    ||  ||     
TAGACGTCTGGTCCGTTGGATGCATATTCGCTGAAATGGTGACTCAAAGGCCTCTGTTCCCTGGTGATTCAGAGATTGATGAGTTATTCAGAATATTCAGgtatactctagaatcctggatattcacggagatt-cgctaactgggaattggcaaagtgcttgttaatatctcagtgt-caaccatatagctacctgatgaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761694|gb|GD734625.1|GD734625
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|193591019|gb|FK545536.1|FK545536
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|8669339|gb|BE190446.1|BE190446
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|15815178|gb|BI787453.1|BI787453
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|208184982|gb|GD984968.1|GD984968
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGG
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGG
EST: gi|192301718|gb|FG994412.1|FG994412
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGG-TACCC-AAATGA-GACACATGGCCTG-TGTA-CTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192304398|gb|FG996720.1|FG996720
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|193395746|gb|FK364819.1|FK364819
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGG-TACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|192312082|gb|FK003859.1|FK003859
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192302863|gb|FG998545.1|FG998545
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|151411049|gb|EV280860.1|EV280860
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGA
EST: gi|193359793|gb|FK328539.1|FK328539
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAA
EST: gi|193729006|gb|FK663868.1|FK663868
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|193464902|gb|FK430156.1|FK430156
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAA
EST: gi|193464022|gb|FK428324.1|FK428324
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGA
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGA
EST: gi|193378745|gb|FK344316.1|FK344316
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|22933208|gb|BU550347.1|BU550347
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192301719|gb|FG994413.1|FG994413
EST:     CCTTTATTCCCTGGGGACTTTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|208081860|gb|GD882918.1|GD882918
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|209726536|gb|BW658090.1|BW658090
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|192304397|gb|FG996719.1|FG996719
EST:     CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAA-TATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: CCTCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
EST: gi|214008217|gb|DB988548.1|DB988548
EST:     CATCT-GTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAG                         AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC
genomic: C-TCTATTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGgtaaatatct ... ttatatgaagAATCTTGGGTACCCCAAATGAAGACACATGGCCTGGTGTAACTTCATTGCC