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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATGAAATTGGTGGTGGATCTGGAACATGTGCCAAGGGTATAATGGATTACATAATGTTGAATGCTCCTGCAAAAGTTTATAACAGTATGACTTACATgtacgtgccttgatactcaatgtaatatatattttattataaaaccaaattatagtgctagacacagtttttaattttttttgttgggatagtgggctgt...

Basic information

species Glycine max
transcript GLYMA15G14130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G14130.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G04900.1 (Arabidopsis thaliana), 5'ss of exon 5
TATATGAAATTGGTGGTGGATCTGGAACATGTGCCAAGGGTATAATGGATTACATAATGTTGAATGCTCCTGCAAAAGTTTATAACAGTATGACTTACATgtacgtg----------ccttgatactcaatgtaatata---tattttattataaaaccaaattatagtgctagacacagtttttaattttttttgttgggatagtg-ggctgt--------------------------------
|||| ||||||||||||||||| || ||||||||||||||| || |||| || ||||||||||||||||| |  | | | || || |  ||||  |||| ||||||           |||   |  ||||| |||  ||   | | ||  || |||| ||  ||    ||  |   |    |  |||  | || ||     ||  ||    | |                                
TATACGAAATTGGTGGTGGATCGGGCACATGTGCCAAGGGTGTATTGGACTATATAATGTTGAATGCTCCGGAGAGAATCTACAAGAACATGAGCTACACgtacgtatgccagttttcctctcttgtcaatttaagctagcatgtattcatacaaaatcatctttggctggaacttaagaataataaactgttatga-aacatgctgcaattatattaactgcatggtatttttaatatatatcag

upper sequence: GLYMA15G14130.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0136g00390.t01 (Vitis vinifera), 5'ss of exon 6
TATATGAAATTGGTGGTGGATCTGGAACATGTGCCAAGGGTATAATGGATTACATAATGTTGAATGCTCCTGCAAAAGTTTATAACAGTATGACTTACATgtacgtgccttgatactcaatgtaatatatattttattataaaaccaaattatagtgctagacacagtttttaattttttttgttgggatagtgggctgt--
|||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||| ||||||| ||||| | |||||| || ||||||| ||||||||| |||| || || |||    |     ||         | |||||    |||  ||  | |    | ||  || |       ||  ||||     || |  
TATATGAAATTGGTGGTGGATCAGGAACTTGTGCAAAGGGCATAATGGATTACCTAATGCTGAATGCACCTGCTAGAGTTTACAATAGTATGAGTTACATgtatgtgcattcattctctccttttaccatgacaataagttaaacctgtatatgctg--acatggggcttacaaatgccacctttttgatatctatctttgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193453567|gb|FK419931.1|FK419931
EST:     TACATAATGTTGAATGCTCCTGCAAAAGTTTATAACAGTATGACTTACAT                         CTCAGTTGAGATTAGTCCTTCACTTGCTGAGGTGCAAAGAGAAACTGTTGG
genomic: TACATAATGTTGAATGCTCCTGCAAAAGTTTATAACAGTATGACTTACATgtacgtgcct ... ttaactacagCTCAGTTGAGATTAGTCCTTCACTTGCTGAGGTGCAAAGAGAAACTGTTGG