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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaatagacatttcagttcctcttatgactttcaatgttctataattttggttctgtatattggtatttatctagccagatttagctgatggttaattattttgtataccag

Basic information

species Glycine max
transcript GLYMA15G13910.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13910.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G63890.2 (Arabidopsis thaliana), 5'ss of exon 6
AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaatagacatttcagttcctcttatg-actttcaatgttctataattttggttctgtatattggtatttatctagccagatttagctgatggttaattattttgtataccag
 |||  ||| || || ||  |||||  ||||  ||| || ||||||||||| || || ||||| ||||| || || ||||| ||||||||||||||  |||||||||    |    ||  | ||   ||| |  | ||    |||  | |  |  |  |  ||| |  |  | ||  |    | | | ||  ||    |                    
TGTCAGATGTAAAAGGGTGTCAAGATCTATTGGCTCTGTAGGTCTTTATGTGCCTGGTGGAACAGCTGTTTTGCCATCAACGGCTTTGATGCTTGCTATTgtaagttct-catgttttatacttttgcttgttcatttctcttgtaattttgtaataatcttgtcttct--ttttccttaccctatacttctctctcag--------------------

upper sequence: GLYMA15G13910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 7
AGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaataga-----catttcagttcctcttatga------ctttcaatgttctataattttggttctgtatattggtatttatctagccagatttagctgatggttaattattttgtat-accag
 ||  |||||||  | |||||||| || |||   || || ||||||||||||||||| |||||||| || ||||||||||||||| |||||||| |||||||| |||||  | |     ||  ||| || |  || | |      ||| | |       | |||| | | ||  |  |||  || | | | |||| ||||   |||   || | ||| || | | |||||
TGTTAAATGCAAACGGGTTGCAAGGAGCATTGCTTCTGTTGGTCTTTATGTTCCAGGAGGAACTGCAGTGTTACCTTCAACAGCTCTGATGCTTTCAGTTgtaggttgatcaaatttaccaagtcaattgccttttttagttcatcttcctacaaatctttatttagatcctcgactttgtgatgtctgttgccacatttgattgaca-ttgagtatgttctgtcaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811785|gb|BQ296263.1|BQ296263
EST:     TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCTGTT                         CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
genomic: TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaa ... tgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
EST: gi|254340468|gb|GR850770.1|GR850770
EST:     TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTT                         CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT
genomic: TTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTgtaagttgaa ... tgtataccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACT