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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag

Basic information

species Glycine max
transcript GLYMA15G13640.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttact-ctcattagtttgtgtttgtgactgttgtttatgtcag
|||||||||||||||||||||||| | |||||||| | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| ||   | |||  ||           ||||||        |  | |      |  |  ||| ||   |||                             
CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGTAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGgtatgttgtt--tttcatcatcacacagcc---caatgtctccattcggcagacactcctaatagactactgcatag-----------------------------

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
|||||||||||||||||||||||| | |||||||| | ||| || |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| | |||  | |   ||  | || | | ||| |    |  ||     |     |  |    || || || || ||   |||                    
CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgat-ttgttttc--cttgatattgtgttacatttcccattaactggca-----tgctacagaccctgataagcttcattttag------------------

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G178102_T01 (Zea mays), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgtta---ttggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
||||||||||||||| |||||||| | |||||||| | |||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||     |   |    || | |||| ||| |   | |  | |  ||| | || |  ||  ||| |  | |                                 
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGgtatgttgattcttattggtcttgcattttcttttagcttctgcagctgtgagacatctaattagtttccatttag--------------------------------

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgtta--ttggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
||||||||||||||| |||||||| | |||||||| | |||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || |   |   ||   | || || |||||| |   | |  | |  ||  | |  |  ||  ||| |  | |                                 
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttatcttctgcagctgtgcgacacctaattaatttccatttag--------------------------------

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
|||||||||||||| ||||| |||||||||||||| |||||||| |||||  | |||||||| ||||| ||||| |||||  | || ||||  ||||||      |||     ||||| |||| ||| |  || |||     | | ||  |    ||||       ||    | |    ||   | |  ||| ||      
CCTGGTCCGGATTCTATTGGTATCGTAGCTGTTTCACGCAACTGCAGTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGTTTAGAACCCATGAAGgtaa-----tggt---gttttctttttatttta--atcttgtgttgtaagaagcggaaattctacgaaggca---atctaaactt-caaatactgtgtag-----

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgta-----tgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
|||||||||||||| ||||| || || ||| |||| |||||||| || ||  | |||||||| ||||||||||| |||||  | || ||||  ||||||     ||  ||| | | | || |   || | || | |||  | | |  | |     |||||   || |     | ||                              
CCTGGTCCGGATTCTATTGGCATAGTCGCTATTTCGCGCAACTGCAGCGGAATTGCAGCACGTGCCTGCGGCCTCGTGAGTTTAGAACCCATGAAGgtaaagagtgcgatttgttacgttctggcttgtgtttataatcattagc--ttacgctagtcttgatttgaaaacaaatatag---------------------------

upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||| || || ||||| ||||||  |     |     ||||   | | ||  ||   |||       |   || || | |  |    |||    ||                             
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag-----------------------------