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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctag

Basic information

species Glycine max
transcript GLYMA15G13380.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtt---tatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctag
|||||| ||||||||||| || |||||||| || ||||| |||||| |||||||||| ||||||||| ||   | | |     ||| ||| |       |  || || | ||   |  ||   |   |         ||  ||| |||
GTGGTGCCATGATATTGGCCGGGAACAAGCTGCCAATAAGCCTCTTCTAAAAACAGTATTTCAGgtatttatctgttttttcagataacctttgccacagcaatacattcttgatgcatttgtaacatttggacaactgggtttgtag

upper sequence: GLYMA15G13380.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgta----gtttatatccat------ggattaccctctggttgggtattcaatatttgagttttcacactttgatcctt-------cttgtatttctag--------
|||||| ||||||||||| || |||||||| || |||||||| ||| |||| || || |||||||||    | ||| |||  |      ||  |||| | ||      |  |  | || | |||  | |   | ||||   |       |||| |  |||          
GTGGTGCCATGATATTGGCCGTGAACAAGCTGCCAATAAACCACTTCTAAAGACTGTATTTCAGgtaccgaggttaaatctgtctttcagggataccttatgcacatatgatatacatat-agtcctgatcatctgatgtatagtaacacttggacatctgagtatgtag

upper sequence: GLYMA15G13380.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 4
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctag
|||||| ||||||||||||||||| || || || || ||||||||| | ||||||||||| |||||| |   |||||||   ||    ||| ||    ||||  |||    | |    |   |  |  || | |    | | |||
GTGGTGCCATGATATTGGTCGAGAGCATGCTGCGAACAAACCTCTTCTGAAAACAGTTTTCCAGgtactccctatccatatttttgtatctagtacaatattgcataacaaattcaataagatgagtcccgtttctcttctatag

upper sequence: GLYMA15G13380.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ31796 (Selaginella moellendorffii), 5'ss of exon 6
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtt-tatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctag
|||||||||||||||||||||||| || ||||| || |||||| |  | || || || ||||||||  |  |   |  | | ||     |||   |   |  |   |||||   ||||||                          
GTGGTGTCATGATATTGGTCGAGAGCACGCAGCCAACAAACCTTTGCTGAAGACCGTCTTTCAGgtgatcatcctttgaagcatcgtattctcaattcctgattcctattt--tttttcag-------------------------

upper sequence: GLYMA15G13380.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ38064 (Selaginella moellendorffii), 5'ss of exon 5
GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtt-tatatccatggattaccctctggttgggtattcaatatttgagttttcacactttgatccttcttgtatttctag
|||||||||||||||||||||||| || ||||| || |||||| |  | || || || ||||||||  |  |   |  | | ||    ||||   |   |  |   |||||   ||||||                          
GTGGTGTCATGATATTGGTCGAGAGCACGCAGCCAACAAACCTTTGCTGAAGACCGTCTTTCAGgtgatcatcctttgaagcatcgtactctcaattcctgattcctattt--tttttcag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAG                         GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA
genomic: TTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGgtagtttata ... gtatttctagGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATA