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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgatattgtgctactttaagagagatgatgtctatggcatccaactcttcgtaatgttaatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag

Basic information

species Glycine max
transcript GLYMA15G13080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g52630.2 (Oryza sativa), 5'ss of exon 4
CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtg-tgatattgtgc-tactttaagagagatgatgtctatggcatc-caactcttcgtaat-gttaatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag
 || || || ||||| || |||||||| ||||||||||| |||||||||||||||| |||||   | || || || ||||| || ||||| | | | |||||  | |  | |||  | | || |   ||   | |   |||    | | ||  ||   | | | |  |   | | | ||   |  || |                                         
TCTATACAGCGATTACCTGGATGCTGCAGATACACCTGGGTGGTATTGTGGACCTACTTTCTACACTACAGAAGTCCTCCGCAAATTTGCAAGGTCACAGgtaaggttttgttgcccatgctcttgaagtagtcaaagctacattagcacagttcggtgaatttgacacccaaaacccttcaatttgcag----------------------------------------

upper sequence: GLYMA15G13080.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgatattgtgct--act-ttaagagagatgatgtctatggcatccaactcttcgtaatgtt----aatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag---------------------------------------
 || || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||   |||||| ||| | ||||| |   ||||||| |    | || | ||  ||| || | ||| ||| |       | ||  |    |   |||  |     ||||| |    |||      | || || ||  | | |||   ||    |   | ||||  ||                                        
TCTATACAGTGATTATCTGGATGCTGCTGATACTCCTGGATGGTACTGTGGACCTAATTTCTATTCGACAAGTGTGCTACGTGACTTTGCTAGATCCCAGgtattgcttcttttcctttactctttacagaaatggtaatctcag-atatagtaatggataagatccaaaaatgacacttttaaccaagat-tgtacgaagatctttttaaactccattttttattttgacatctaaattggatttaactcggccttgctgtattttggcag

upper sequence: GLYMA15G13080.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgatattgtgctactttaagagagatgatgtctatggcatccaactcttcgtaatgttaatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag
 || |  ||||||||||| || ||||||||||| || |||||||| ||||| ||||| |||| | | |||||  | || || || ||| | |   | ||||| ||    |       |    || | | | ||| |  | ||     | ||  | | | | |   |  | |   |  |  |                                             
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatgattcacaaatgaaggaaaacaaacaagattttgaaggagcttatctgatggaactttgtgtcttttgttttggcag---------------------------------------------

upper sequence: GLYMA15G13080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 5
CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgatattgtgctactttaagagagatgatgtctatggcatccaactcttcgtaatgttaatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag
||| || |||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||| || || ||| | ||||||||||||||||| || |||||  || | | | ||   |  |  ||       |||    ||  || |   || |   ||||   |   |     | || |  | ||   |||| | | |    |   || | ||||
CCTGTACAGTGATTATCTTGAAGCTGCTGACACCCCTGGATGGTATTGTGGACCTAATTTCTATTCAACTGAAGTCCTGCGTGAATTTGCCAAGACCCAGgtatgcgatatc-tgattcctcaattaaagttgtgaggg-aacatgagtctgctcatgtagtaataaatattgttggaaccaacaaggtc--acttaaatttttcatatctctgaccttctggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009233|gb|BG725837.1|BG725837
EST:     GTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|6502372|gb|AW203745.1|AW203745
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGGAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|14012135|gb|BG727057.1|BG727057
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|26058724|gb|CA801638.1|CA801638
EST:     ATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: ATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|58019165|gb|CX705907.1|CX705907
EST:     CGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: CGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|7640040|gb|AW734349.1|AW734349
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|58017124|gb|CX703866.1|CX703866
EST:     GACTTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|13789346|gb|BG651937.1|BG651937
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|16347793|gb|BI973388.1|BI973388
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|6072595|gb|AW101982.1|AW101982
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|15813092|gb|BI785367.1|BI785367
EST:     GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: GACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT
EST: gi|58022357|gb|CX709098.1|CX709098
EST:     CTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAG                         ATTGATTACATCCTTGGAAATACCCCAAGGAAAATGAGCTATGTTGTAGGT
genomic: CTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgata ... gtttttgcagATTGATTACATCCTTGGAAATAACCCAAGGAAAATGAGCTATGTTGTAGGT