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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAgtatgttgatttaataattctttacttctaatcatgtgtggacgtgataatatctgtttcgtctacactccatgttatcttgtctcttgtggaatgacat...

Basic information

species Glycine max
transcript GLYMA15G12980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12980.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 4
GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAgtatgttgatttaataattctttacttctaatcatgtgtgg-acgtgataatatctgtttcgtctacactccatgttatcttgtctcttgtggaatgacat-
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GAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAAgtatgctgataccatt-ttatttaatcatgttaaattggattatgttcttgtacttgtatgatgcac-ttgattgcaaaactttgctttctcgatgtgcaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303675|gb|FG998657.1|FG998657
EST:     ATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA                         TTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCA
genomic: ATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAgtatgttgat ... tcatttgcagTTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCA
EST: gi|192295897|gb|FG992663.1|FG992663
EST:     ATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAA                         TTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCA
genomic: ATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAAgtatgttgat ... tcatttgcagTTGAGGAATTTGGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCA