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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGATGGAGTTCTACTAAGAAACCATATTCCACGTATCCTTAAAAAGCACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttgtacaaatgttgaagtttaatttatgtggatttcatcttgttaaaatgcttaaagttgactatcatgcttttcttttag

Basic information

species Glycine max
transcript GLYMA15G12780.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12780.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 5
CAATGATGGAGTTCTACTAAGAAACCATATTCCACGTATCCTTAAAAAGCACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttgtacaaatgttgaagtttaatttatgtggatttcatcttgttaaaatgcttaaagttgactatcatgcttttcttt-tag
 |||||||| ||  | ||  | || || || ||  | || || || || || ||||  |||||||||||||| || |||||||| |||||||||||||||||   |  | |    ||     | | | | |  ||  | | |||| ||  |  | | || |  ||| |   | |   | || |    ||
GAATGATGGGGTGATTCTTCGCAATCAAATCCCTAGAATTCTCAAGAACCATTTCAAAGGAAAGCCATATTATGTGGATCTTCTGGATTTGTTTAATGAGgtgagatctttttgcat---agaatatgactggtg-agttctcatgttaatggagtactaatggtttatctttaccatgttttaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208102994|gb|GD901432.1|GD901432
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|298187020|gb|HO034169.1|HO034169
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|13789758|gb|BG652349.1|BG652349
EST:     CCTTTAGGG-AAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAA                         GTTGAGTTCCAGACTGCTTCAGGGCAGATGATA
genomic: C-TTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATA
EST: gi|9902003|gb|BE610971.1|BE610971
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GGTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTT
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACT-
EST: gi|193512996|gb|FK470544.1|FK470544
EST:     ATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|192294520|gb|FG987449.1|FG987449
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|19345889|gb|BM890769.1|BM890769
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAA                         GTTGAGTTCCAG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAG
EST: gi|298181906|gb|HO026081.1|HO026081
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|7233280|gb|AW568628.1|AW568628
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|5606131|gb|AI900229.1|AI900229
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GGTGAGTTCCAGACTGCTTCANGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|15814471|gb|BI786746.1|BI786746
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACC
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACC
EST: gi|9565120|gb|BE474629.1|BE474629
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|208045687|gb|GD838961.1|GD838961
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
EST: gi|14259182|gb|BG882090.1|BG882090
EST:     ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAG                         GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG
genomic: ACTTCAGGGGAAAGCCATATTACGTTGATCTTCTTGATTTGTTTAATGAGgttgtacttg ... tttcttttagGTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTG