1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
species | Glycine max |
transcript | GLYMA15G12220.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAATEST: gi|26045902|gb|CA783326.1|CA783326
genomic: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttc ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAATEST: gi|151403296|gb|EV273106.1|EV273106
genomic: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttc ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
EST: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG GAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
genomic: TCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttc ... gttgtttcagGAGCTCTTGACAAGACATAAATCTACTGTAGCTGAATTCCTATCCAAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAGgtgggttttctgtgaaagaagtcgtgatcacagtttccatattttgtgccatgcacttttttgcagcagagtcaatggtatatggtgttgtgttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG