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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTgtaagttttttttgaatgcacacatttttatttcataatattcaatttgataatacattggagccacttactgtgtttccatgtggtttttag

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 5
GAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTgtaagt---tttttttgaatgc-acacatttt--------tatttcataatattca----atttgataatacattggagccacttactgtgtttccatgtggtttttag------
 ||  | || || || |||||| |||| | | |||| |||||||||||| |||||||||| || |||||||||| |||   || | |||||||| |   |||||        ||||   |  |||| |    |||   | |||  |||||    || | ||  |     |     | || |      
AAACCTGGCGAGCAACAATTTAACTGGGAGTTTTCCGTATTCCATTTCTACCATGGTTTCTCTTAATTATTTgtgagtgatttgtcttgaatgctattgattttgaatttcctattatgttttatttacatgattcagttataatttggaagtgct-attgcctgatgctaaaactcttggttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925311|gb|AW831398.1|AW831398
EST:     TCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTT                         GAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAG
genomic: TCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTgtaagttttt ... tggtttttagGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATATTTTTGCTAG