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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGGgtatgactctttctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatcttgtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatag

Basic information

species Glycine max
transcript GLYMA15G10970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10970.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G23590.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGGgtatgactctttctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatctt-gtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatag
|| |    || || ||   || ||| ||||| | | |||||||||||||||| || || |||||| ||||| |||| || |||||||| |||||  || |  |    | |   ||  |||||||    ||  |    |  |||   |   |     || || |   |  | || | |     ||||  |||||                                                                
GTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattactctcttactgatctttctgtttgtgatttcaccactactttggtacccagaaaagtgcaattgctattgcttgcaagtt-ttact-tacacc---------------------------------------------------------------

upper sequence: GLYMA15G10970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 5
GTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGGgt-atgactcttt----ctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatcttgtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatag
|||||||||||   || | |||||| ||||||||| | ||||||||||| ||||| || |||||| | ||| |||||||||||||||| ||||| | ||||  ||    ||   |   | | | | |||| || |||| | ||| |   |||||||| ||     || || | |  ||  |||  ||| |                                                                       
GTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGGgtcaggactgattaaagctgaaccgatgactttatttttccatgaa-tagtgatac-aaatttatgttaaattttcat-gatgataaaattatgttgcttcct------------------------------------------------------------------