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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtcctacagttacatggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaatgtgatagaaaatattccgttcttaatcttatccccatgttgtgcag

Basic information

species Glycine max
transcript GLYMA15G09490.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtcctacagttacatggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaatgtgatagaaaatattccgttcttaatcttatccccatgttgtgcag
|| | || | ||    || |||||||| |||||||| |||||| | |||||||| || || || || |||||||||||||| |  |||| | | ||||||||   |||||||| ||  |    |  | || ||   |  || ||  |     || |     | | |   |  | | | |   || ||||| |    | |  |  ||                        
TGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATTGTAATGGAATTTATGCCCAAGgt---ttgtcctataggca----gcgcttttttaaatttgcattattcacatatctgatcatcttt---agatctgagacctatttgataaactgcaataggagctgctg--------------------

upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 5
TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtcctacagttacatggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaat-gtgatagaaaatattccgttcttaatcttatccccatgttgtgcag
|| | || | ||    || || ||||||||||| || |||||| |||| |||||||| || || | ||||||||||||||| |  |||| | | | ||||||   ||||| ||  |  |     ||  || |    | ||     ||||    |  |  ||  ||   ||        | |||| | |||  |  ||  |  ||                           
TGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgt---ttgtcttaagggcaatatcaatgttttcaagtcggacg-acttgctggtcgttgtggctgaccgactagggcgattaatcgcgattaatcatgattagt---------------------------

upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtcctacagttacatggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaatgtgatagaaaatattccgttcttaatcttatccccatgttgtgcag
|||  || |||| | | |  ||||||||||  | || || ||||| |||||||| ||||| ||||  ||||||||||||||||| |||||| | |||| |||| |   |    | | || ||   | ||||||| |||   || | ||    |     |  | |  ||  |  |   |   |                                                
TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttctctgataaatttgaaattattt-ttgcatttagtttcacgaaaccaagatctcatttgatatattcttcag-----------------------------------------------

upper sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 5'ss of exon 5
TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtatttt--gtcctacag-ttac----atggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaatgtgatagaaaatattccgttcttaatcttatccccatgttgtgcag
|||  || | |||||||| || ||||| ||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||| | |||||||| ||||   || | ||| ||||    ||| || |  |||  |       | ||||| | | ||  || ||   ||   |||    |   | ||||      | | |                              
TGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttttcatcattcagattactagaatgaaataaaattaatgtaatgatccttggaactgttactgattagctg---tttcttggatctttgat------tttccta----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709845|gb|BF009569.1|BF009569
EST:     CTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGATTATCTTCCCATG                         GGAGATCTTCATGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACA
genomic: CTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtc ... tgttgtgcagGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACA
EST: gi|11688954|gb|BF596692.1|BF596692
EST:     CTGTGACCCANAGTAGTCCAATGATGATTGTGACAGAATATCTTTCCAAG                         GGAGATCTTCGTGATCTCATGAAGAGAAAAGGAGCTTTGAAACCATCAACA
genomic: CTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtc ... tgttgtgcagGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACA