1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgccttctctctgtaaatgttctctatagatttattttttttcttaagaataaattacaagtttaacccatttataacctgtgatcttttctgg...
species | Glycine max |
transcript | GLYMA15G08210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|208325975|gb|GE121911.1|GE121911
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|10235717|gb|BE804605.1|BE804605
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|7684647|gb|AW755295.1|AW755295
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|193386147|gb|FK351201.1|FK351201
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: CAACACATATAGGAGAACATTTACAACTAAAAATG GG-AAAAGGTGCGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|192303339|gb|FG995633.1|FG995633
genomic: CAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|8826310|gb|BE210040.1|BE210040
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: GTGAGGAAGTATGTCAACACATATANGAGAACATTTACAACTAAAAAATG GGAAAAACGTGAGCCAAAGCTCCTAAGATACAGCCGCTGGTCACTCCCCTEST: gi|6071105|gb|AW100492.1|AW100492
genomic: GTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAA-TGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGC-AAAGCTCCTAAGATACAACGGCTGGTCACTCCCCT
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|22525238|gb|BU084049.1|BU084049
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTEST: gi|18730661|gb|BM526007.1|BM526007
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACT
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATAEST: gi|13181588|gb|BG352928.1|BG352928
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTTCAACTAAAAATG GGAAAAAGGTGAGCCAAGCTTCTTAGATACAAAGGCTGGTCACTTCCCTGAEST: gi|192332916|gb|FK025013.1|FK025013
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAATATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|20811812|gb|BQ296290.1|BQ296290
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGEST: gi|4313890|gb|AI461009.1|AI461009
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAG
EST: TGTGATGAAGTATGTCAACACATATAGGAGATCATTTACAACTAATAATG GGAAATAGGTGAGCAAAGCTCCTAAGATACTACGGCTTGTCACTCCCCTGAEST: gi|6501870|gb|AW203229.1|AW203229
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACGACTAAAACTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|6566557|gb|AW234200.1|AW234200
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: GTGGAG-AAGTATGTCAACACATATAGGAGAACATTTACGACTGAAAATG GGAAAGAGGTGAGCCAAGCTCCTACGATACAACTGCTGGTCEST: gi|6228247|gb|AW156846.1|AW156846
genomic: GTG-AGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTC
EST: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGAEST: gi|17023205|gb|BM094239.1|BM094239
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGA
EST: TGTGACGAAGTATGTCAACACATATAGGAGAACATTTACCACTAAAAATG GGAAAAAAGTGAGCAAAGCTCCTAAGATACAACGGCTGG
genomic: TGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgcc ... ttggttgtagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGgtaaggtgccttctctctgtaaatgttctctatagatttattttttttcttaagaataaattacaagtttaacccatttataacctgtgatcttttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc