1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctcatcaaatgaattttcatatctctatcttttcatataaaatcttggaaaaaatgttaattggtattctgaattttcggttgtgtgcaatttg...
species | Glycine max |
transcript | GLYMA15G07570.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGEST: gi|193499523|gb|FK461276.1|FK461276
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAG
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|38193470|gb|CF922676.1|CF922676
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|16348257|gb|BI973852.1|BI973852
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|58021979|gb|CX708720.1|CX708720
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|15812571|gb|BI784846.1|BI784846
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGAACTGTTGCACTTCTTGCCTTTGAAEST: gi|192328969|gb|FK021072.1|FK021072
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|208317059|gb|GE111500.1|GE111500
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCTCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|22928038|gb|BU545177.1|BU545177
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAEST: gi|151408269|gb|EV278077.1|EV278077
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
EST: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAAT CAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
genomic: AAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctca ... tggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCGCTAGAGTTTGCCCAAGAGGAGCTTGCACCAAGGGGAGAGGAAAATgtaaatctcatcaaatgaattttcatatctctatcttttcatataaaatcttggaaaaaatgttaattggtattctgaattttcggttgtgtgcaatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA