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GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAGgtaatttacatttcatttatatttgtacttgaaaattgttaggtttttgtaattccaagaatctgaatagggtgcaagaatagagaagaatggacagtat...
species | Glycine max |
transcript | GLYMA15G07480.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCCEST: gi|38192157|gb|CF921363.1|CF921363
genomic: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAGgtaatttaca ... tattttacagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCC
EST: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCCEST: gi|254315478|gb|GR825287.1|GR825287
genomic: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAGgtaatttaca ... tattttacagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCC
EST: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCC
genomic: GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAGgtaatttaca ... tattttacagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTCCCAATTATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCAGACGGAAAGAAGAAGCTGCTGCACGAGgtaatttacatttcatttatatttgtacttgaaaattgttaggtttttgtaattccaagaatctgaatagggtgcaagaatagagaagaatggacagtat
- - - - - - AAAGAA
- - - - - - AAGAAG
- - - - - - - - AAGAAG
- - - - - - - - AGAAGC
- - - - - - - - - AAGCTG
- - - - - - - - - - AGCTGC
- - - - - - - - - - GCTGCT
- - - - - - - - - - - TGCTGC