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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGGAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGTGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttcaatctatttatgtcattcaaacatgtaatgtccattttttttctgtgctcttatatgtttaaactgttttttaaatactgacag

Basic information

species Glycine max
transcript GLYMA15G07340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 5
GTACGGGAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGTGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttca------atctatttatgtcattcaaacatgtaatgtc-catttttttt---ctgt-----gctcttatatgtttaa--actgtttt-ttaaata-ctgacag--------
| || |||||||||||||| ||||||||| | |||||||||||||||||||||  |  |  |||||| |||||||| ||||| ||||||| ||       || ||| |  |  ||   |  || ||| |  ||||| ||||   ||||      ||  | | | || ||  | |||| |  || ||| || ||          
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatt-tttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag