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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACCCAGgtttgtttctttccgaaggatgatatcctcagcattcttcttggtagttggaatgtcatctgtcattatgattgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcag

Basic information

species Glycine max
transcript GLYMA15G06660.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G164743_T01 (Zea mays), 5'ss of exon 5
-----------------------GCTTCATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACCCAGgtttgtttctttccgaaggatgatatcctcagcattcttcttggtagttggaatgtcatctgtcattatgattgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcag
                         || |||||||||||||| || ||||||||||||||||| |||||  | ||||||   ||            |  |  |||    |||  ||||    ||    |  ||   | || || |||           | |    | || | || | | | | |    | || ||       
GTTTGTGGGCGTTGGCGAAGCTTCATTTATAAGTCTTGCAGCTCCATTTATTGATGACAATGCACCAGTAGCTCAGgttctgttgccc--------tattgcccttgagatt--tctttaccgt-aacacatccaatttctttttgaaca--------tgtaggatagctggacat-tattttattaagaagaata------

upper sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 2
-----------------------GCTTCATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACCCAGgtttgtttctttccgaaggatgatatcctcagcattcttcttggtagttggaatgtcatctgtcattatgattgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcag
                         || ||||||||||| || || || ||||||||||||||||||||| | |||||||||||||| |    |  |  |||  |  |  ||  | |  |||  ||     |  | | || ||||   | |             |||  |||  || | ||| |   || ||          
GTTTGTTGGTGTTGGTGAGGCTTCATTTATAAGTCTTGCTGCTCCATTCATTGATGACAATGCCCCAGTTGCTCAGgtttgtttcttccttttgttt--tatgttgggactttctttctgtatatgt----ttttttttctttatatataaa------------ctgttggacactttttcttattttgaagag--------