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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGAGGGCATTTAATCCGATTCACATCTACTATTTCTTCAAGAGGAACTCAACTAATGCATGGTATTCTCTAGGGGGTTGCCTTCTGAGTGCAACTGgtaaacacatacatgcaagatcttgatactgagaatgcaataataccatacattttgtcctatcatttatgtaaatttggttctactagtctgtttttgt...

Basic information

species Glycine max
transcript GLYMA15G05880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 2
GTCTTGAGGGCATTTAATCCGATTCACATCTACTATTTCTTCAAGAGGAACTCAACTAATGCATGGTATTCTCTAGGGGGTTGCCTTCTGAGTGCAACTGgtaaacacatacatgcaagatcttg-atactgagaatgcaataataccatacattttgtcctatcatttatgtaaat--ttggttctactagtctgtttttgt-
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GTCTTAATGGCATTTAATCCTGTTCACATCTATTACTTCTTCAAGAGGAACTCGACTAAAGCCTGGTATGCCCTTGGTGGTTGTCTTCTATGTGCAACAGgtaaccagtcaattgaggaattttacatttcaagaatgca-cagtacttgacat---gtcttgtggataggttcaataattgctttaactattaaatttggttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731927|gb|BU764111.1|BU764111
EST:     CTCAACTAATGCATGGTATTCTCTAGGGGGTTGCCTTCTGAGTGCAACTG                         GTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTC
genomic: CTCAACTAATGCATGGTATTCTCTAGGGGGTTGCCTTCTGAGTGCAACTGgtaaacacat ... catgttgcagGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTC