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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCTGCACCTCTTCTTGGAGATTCAGTGAAATCTATAGTGCAGTTCTCCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttaggatcatagagtatattgctatgactttttatacttttgctgttatggttgtttcattcacttggttgatgttatttgctccatctaacag

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCTCCTGCACCTCTTCTTGGAGATTCAGTGAAATCTATAGTGCAGTTCTCCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttaggatcatagagtatattgctatgactttttatacttttgctgttatggttgtttcattcacttggttgatgttatttgctccatctaacag
||||||||| || |||||||||||||| || ||| | || ||||||||||| ||||| |||| ||  |  |||||| | ||   || ||| ||||| |||||| |  || || ||        |  || |  |||   |||  || |   || |||| |||    | ||||        ||| |   | ||| || |||
ATCTCCTGCTCCCCTTCTTGGAGATTCTGTCAAAGCAATTGTGCAGTTCTCTCTTGAAGTTTCCTGTAACCAAAATCTGGAAAGTAGCACCCGTCACCAGgttagg-agaattat--------tctctttcgcttgaaataggttcga-attgtggt-gttatgattacttat---gccttactccattcatttaccag

upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 5
ATCTCCTGCACCTCTTCTTGGAGATTCAGTGAAATCTATAGTGCAGTTCTCCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttaggatcatagagtata--ttgctatgactttttatacttttg--ctgttatggttgtttca--------ttcacttggttgatgttatttgctccatctaacag---------------------------------------------------
||||||||||||||||||||| || || || ||||| || ||||||||||| ||||| |||||||| ||||||||||| || || |||||||| ||||||||| |  ||||  ||  | ||||  ||    ||  ||| |||  || |   |  |  |   | |||          |||| |  |||| ||  || | ||   ||||   |                                                   
ATCTCCTGCACCTCTTCTTGGGGACTCTGTTAAATCCATTGTGCAGTTCTCTCTTGATGTTTGCTCTAGTCAAAATTTGGAATCCAACACACGCCATCAGgttaggaaggag-atgaaatataatttttcctgtatttctattgttctagccaatcctaactatttgggatatcatttcattgagttggtgagatgtactttttctatttgttcctggatcctgaatatcttgttccatccttttgttttgaaatatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163918319|gb|EH039094.1|EH039094
EST:     CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAG                         GCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAA
genomic: CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttagg ... catctaacagGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAA
EST: gi|208125455|gb|GD923775.1|GD923775
EST:     CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAG                         GCAATTCAAATCATT
genomic: CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttagg ... catctaacagGCAATTCAAATCATT