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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag

Basic information

species Glycine max
transcript GLYMA15G04850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 6
GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag
 || | ||||| | |||| ||| ||||||| ||||| || || |||||||||||||| || || ||||| |||||||| |||||||| || ||||| || ||||||          ||  |||     |  | || |||     || | |  || ||||   | | |     |||  ||| |   |          | |||    ||||| ||   ||| ||         
ACAAAAGGAAATGAGAAAGGGTATTGATCTAGCTACTACACTCGAACGTATCGAGAAGAATTTCGTCATCACTGATCCTAGGCTTCCCGATAATCCCATTgtaaga---------acaaatgttttagaaaaatggaaa----ctttttttgttatgtttcatttcga----ttggtctgaaaacg---------tattgtttgctttgtcctatgtttctag--------

upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 6
GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagact----ctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtactt---gctttttactttttcag
 || ||||||| | ||| |||| ||||||| || ||||||||||||||||| ||||| ||||||||||| |||||||| || || || || ||||| || || ||| |    ||   ||| ||| ||       ||||| ||   ||||  | | |     || ||  |||         |   || |  || |||  |   |||    ||  || ||    ||||||   |||||||
ACAAAGGGAAATGAGAAGAGGTATTGATCTGGCCACCACGCTTGAACGTATAGAGAAGAACTTTGTCATCACTGATCCCAGACTGCCTGATAATCCCATTgtgagaataatacttcaaattattggt-------tactgcaatcatgttctttttaa---attatgatttgagcatgcacataagaag-aaatatgggat-ttgtttgtttgatagttctaactttttgaattttcag

upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S17_314V6.1 (Physcomitrella patens), 5'ss of exon 6
GCA-GAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattc--ttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag
 || |   |  | ||| | |||  ||||||| ||||| ||| ||||||| || || |  |||||||||||||| |||||  ||||||| |||||||| || |||||  ||     |   ||  ||  | |      | |||     || || ||   | |     ||||| ||   |||   |||| | ||  | |  |  ||| |  |                         
-CATGCTCGGCATGCGTAGAGGAATTGATCTGGCTACTACGATTGAACGAATTGACAGGAACTTTGTCATTACCGATCCCCGGCTTCCCGACAATCCCATTgtaagtttcgactgacagttgctattgtaaattcaataaa-----tcgctgatggaggtac---ttggaatcaactgtggcggagctaaatctttgtccgtgtgatatgcag---------------------

upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S179_27V6.2 (Physcomitrella patens), 5'ss of exon 4
-GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag---
  |   ||| |   || | |||  | ||  | || ||||||||||| || ||||| ||||||||||||||||| |||||  |||| || |||||||| || ||||| ||   || |   |        || |  |       |||| || ||    || |   ||| |      |||||| |  | | || |  |    ||   ||  || | |||| |    | | |   |   
TACTCTGGGTATC-CGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaag-cttcttgtactttcaaccgttcaatggtcccctgatgttgctgta-ccatgcttgatgtgga-----tgtacttgcag-gtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag

upper sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27458 (Selaginella moellendorffii), 5'ss of exon 6
-GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag
 ||||| | |||  || |||||  ||||||| || || || ||||||||||||||||| || || ||||||||||||||| |  | |||||||| || || |||||      |||   |  ||    |||    ||  || || |||||    ||  |                                                                          
TGCAGAAG-AAATACGTAAAGGGTTTGATCTGGCAACAACTCTTGAACGTATCGAGAAGAATTTCGTCATTACTGATCCACGCTTGCCAGACAACCCAATCgtaag----catgagagaaatgacatgca----tgttaaggtttttct---gtttag--------------------------------------------------------------------------