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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTATAGCTGGCGTTTATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctctccagagggtggttggacttacacttaccgtttgcccaactaccagcattttatacagtaatctaatttcacaatttaaatagacttatta...

Basic information

species Glycine max
transcript GLYMA15G04300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04700.t01 (Vitis vinifera), 5'ss of exon 5
GAACTATAGCTGGCGTTTATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctctccagagggtggttggacttacact-taccgtttgcccaactaccagcattttatacagtaatctaatttcacaatttaaatagacttatta-----
||||  ||||||| || ||||| |||||||| |||||||  |||||||| |||||||||||||||||||||||| |   |||    | |    |  |   || ||   | |    |  ||  |       ||   |    ||| |||||    | | | | || |  |      
GAACCGTAGCTGGAGTATATGTGGGAATGGAGTATGGGGCGGAGAGGATTCGTGGCACCAGAGACTGGgtaatttt--gcagtatattgccaaatgttttctgtattctatatatatatatgaa---acaatgtggctccctattttcattgatcaca-aaacatgcttcattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208292044|gb|GE094244.1|GE094244
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTAGCAGTAACTGGGG
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGT-GCAGTAACTGGGG
EST: gi|151394173|gb|EV264044.1|EV264044
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209724919|gb|BW669608.1|BW669608
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|26267988|gb|CA819051.1|CA819051
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|151401884|gb|EV271697.1|EV271697
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|151402473|gb|EV272286.1|EV272286
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209720222|gb|BW674562.1|BW674562
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209720223|gb|BW674563.1|BW674563
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|31468370|gb|CD410398.1|CD410398
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209697438|gb|BW675583.1|BW675583
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|31463245|gb|CD405273.1|CD405273
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|254344722|gb|GR851312.1|GR851312
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|151397154|gb|EV267027.1|EV267027
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|192306327|gb|FG995107.1|FG995107
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209697437|gb|BW675582.1|BW675582
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|31474890|gb|CD416918.1|CD416918
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|192306328|gb|FG995108.1|FG995108
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|193329078|gb|FK293082.1|FK293082
EST:     ATGTTGGAATGGAATATGGGGTAGGGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|209724918|gb|BW669607.1|BW669607
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|31468248|gb|CD410276.1|CD410276
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG                         AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: gi|193397507|gb|FK361525.1|FK361525
EST:     ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG                         AAGAATGCCATGATTGGGGGTGC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTATAGCTGGCGTTTATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctctccagagggtggttggacttacacttaccgtttgcccaactaccagcattttatacagtaatctaatttcacaatttaaatagacttatta

- - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtgg