Sequence
atgc intronic sequence ATGC exonic sequenceAGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGgtaatcatgtcagaatattagcgagatccttcttatgaaagaaagtagttgaccatttaacagtgccagtattgatgagtttattcttgtatgctag
Basic information
species | Glycine max |
transcript | GLYMA15G03900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 3
AGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGgtaatcatgtcagaatattagcgagatccttcttatgaaagaaagtagttgaccatttaacagtgccagtattgatgagtttatt--cttgtatgctag
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GGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATGCATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAgtaagaattttagacaat---cgaagt------------agcaatttgaggattattgtgttctcttctagtttatgggcttactatctcatttgtcag
upper sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 4
AGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGgtaatcatgtcagaatattagcgagatccttcttatgaaagaaagtagttgaccatttaacagtgccagtattgatgagtttatt--cttgtatgctag
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GGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATACATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAgtaagaattttagacaatcaaagtggcatttt--------gaggattattgtgttctc-----ttctagttt--atgggcttgctatctcatttgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193424764|gb|FK386021.1|FK386021EST: TCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAG AATGGTGAAGAG
genomic: TCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGgtaatcatgt ... tgtatgctagAATGGTGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGgtaatcatgtcagaatattagcgagatccttcttatgaaagaaagtagttgaccatttaacagtgccagtattgatgagtttattcttgtatgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT