Sequence
atgc intronic sequence ATGC exonic sequenceTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaaactataacatatttctaactggattgatggggaaaataaggttctttatttttactacttgcatttttatgatttgttag
Basic information
species | Glycine max |
transcript | GLYMA15G03200.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g34040.1 (Oryza sativa), 5'ss of exon 5
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaaactataacatatttctaactggattgatggggaaaataa-ggttctttatttttactacttgcatttttatgatttgttag---
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TCTGACGAGGAAAAGACTTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATGAAGAGATTAATATGCTTCGACAGgtttcccctgactttttcgactttgaatttgcctttttaggttccccaatagttcatgtaatcaattatataaactcatg-gtttcacttgtag
upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G142806_T01 (Zea mays), 5'ss of exon 6
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgta---ttctcaaactataacata-----------tttctaactggattgatggggaaaataaggttctt-tatttttactacttgcatttttatgatttgttag
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TCTAACAAGGAAAAGGCTGGAGTACGTGGAATGTGTTTCTCAATACTATGATATTCCAGATAGTGAACGCTCAGATGAAGAAATTACCATGCTTCGCCAGgtaacctttttgacctgtaacttggtgactcgtcctctctacctatttttttcttgaaatgaatcatcttacaccttttttacttgtacatct-tgttctgcag-
upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtat-tctcaaactataacatatttctaactggattgatggggaaaataaggttctttatttttactacttgcatttttatgatttgttag
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TCTGAGAAGAAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCCGAACGTTCTGATGATGAGATCAATATGCTTCGCCAGgtttatcttgtagtctca-gtgcttcta---taaccaattattcaaaagttggtaaatctcttagcaaattaattctttctcag-------
upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaaactataacatatttctaactgg-attgatggggaaaa---taaggttctttatttttactacttgcat---ttttatgatttgttag
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TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatgtgcctgtattgcctatgttgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298183006|gb|HO028269.1|HO028269EST: ATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAG ATTGCTGTTGATTGTCCAAGAACTGTACCTGAAGTTTCATTCTTTCAACAA
genomic: ATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaa ... gatttgttagATTGCTGTTGATTGTCCAAGAACTGTACCTGAAGTTTCATTCTTTCAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaaactataacatatttctaactggattgatggggaaaataaggttctttatttttactacttgcatttttatgatttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA