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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATACACTTTGTACGGTAAATCTAGCATTACAGAGACCTTAAGAGGGTGTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaataagcccacaaattttggcattctctttagaccctgtcccatattttattccttaaatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttag

Basic information

species Glycine max
transcript GLYMA15G02550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02550.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAATACACTTTGTACGGTAAATCTAGCATTACAGAGACCTTAAGAGGGTGTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaataagcccacaaattttggcattctctttagaccctgtcccatattttattccttaaatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttag
 ||||| ||| | || || ||   ||  || ||||||  ||||||||||  |||||| ||||| |||||||||||||||||||| || || ||| ||||||| |    ||   | |   |   |||  |  | |  |  |        |      | |  || ||  ||   |||||  || ||    |                             
GGAATATACTCTTTATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACTCTTTCTTTCAGACTAACACTCATCAGgtatatggtaccactaagcaacatggtttcttttacactcaaaacattaatcacaacttgttgaaaataaa-atggtgttcactgtgtag----------------------------