Sequence
atgc intronic sequence ATGC exonic sequenceTGATGGGAAGGATGATTTTGACTCGGATGAGCATGAGACGCATGCCACCATCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgtaatttgactgagacaactgttatgtgataggagttttacttaactcgtcctcctttcctatttaaattataacaattttctttcaaagtcatgcagct...
Basic information
species | Glycine max |
transcript | GLYMA15G01790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g04590.t01 (Vitis vinifera), 5'ss of exon 3
TGATGGGAAGGATGATTTTGACTCGGATGAGCATGAGACGCATGCCACCATCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgta-atttgactgagacaactgttatgtgataggagttttacttaactcgtcctcct--ttcctatttaaattataacaattttctttcaaa-gtcatgcagct
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TGATGGGAAGGATGATTTTGATTCAGAAGAGCATGAAACACATGCCACAGTCTTGGATAAAATGCTAGCATGGGAGAAAAAATTGTATGATGAAGTGAAGgtgtgcttcttcatcacattggtttcatgggtttaattttccatcattaattaatttgatttttgcacaactgttaatgactttggaatagttgatatgt----
upper sequence: GLYMA15G01790.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ09270 (Selaginella moellendorffii), 5'ss of exon 3
TGATGGGAAGGATGATTTTGACTCGGATGAGCATGAGACGCATGCCACCATCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgtaatttgactgagacaactgttatgtgataggagttttacttaactcgtcctcctttcctatttaaattataacaattttctttcaaagtcatgcagct
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TCACCTAAGCAGCCCCGAGGACTCTGGTAAAGCTGGAAGTCATGCCGGTACTCTGGACAGCTTGTTGGCCTGGGAGAAGAAACTGTACGAAGAAGTTAAGgtaatttc-tcgtgcttcctgttgccagtcttatgtttaaatgtgttatggcag----------------------------------------------
upper sequence: GLYMA15G01790.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ12850 (Selaginella moellendorffii), 5'ss of exon 12
TGATGGGAAGGATGATTTTGACTCGGATGAGCATGAGACGCATGCCACCATCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgtaatttgactgaga--caactgttatgtgataggagttttacttaactcgtcctcctttcctatttaaattataacaattttctttcaaagtcatgcagct
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TCACCTAAGCAGCCCCGAGGACTCTGGTAAAGCTGGAAGTCATGCCGGTACTCTGGACAGCTTGTTGGCCTGGGAGAAGAAACTGTACGAAGAAGTTAAGgtgatgtctcgtgcttcctagtgttatgtt-taaatgtgttatggcag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9985917|gb|BE659923.1|BE659923EST: TCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAG GCTGGTGAACTAATGAAATTTGAGTACCAAAGAAAAGTTGCCGCCCTTAAT
genomic: TCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgtaatttgac ... tattttatagGCTGGTGAACTAATGAAATTTGAGTACCAAAGAAAAGTTGCCGCCCTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGGGAAGGATGATTTTGACTCGGATGAGCATGAGACGCATGCCACCATCTTGGACAAGTTGTTAGCGTGGGAGAAGAAACTCTACGATGAAGTTAAGgtaatttgactgagacaactgttatgtgataggagttttacttaactcgtcctcctttcctatttaaattataacaattttctttcaaagtcatgcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctt