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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGATGCTAATTCCAAGGCAACTGCTGATGCCCCTGGGTCCGAAAATGGGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtgataggaaaatttaagcatatgaatggaatgtttgtgtgtcattggtcaacttttagatgtgatttttctatttttggtatttagagcttg...

Basic information

species Glycine max
transcript GLYMA15G01750.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193382700|gb|FK347199.1|FK347199
EST:     GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG                         GCTGAGGCTCCAAAGAAAAA-GTTAAGAAAATAAACATTCCTGTGGTGGAG
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: gi|19346354|gb|BM891234.1|BM891234
EST:     GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG                         GTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: gi|193402944|gb|FK366034.1|FK366034
EST:     GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG                         GTTGAGGCTCCAAAGAAAAA-GTTAAGAAAAT
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAAT
EST: gi|5770361|gb|AI973535.1|AI973535
EST:     GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG                         GTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: gi|105634312|gb|DW247461.1|DW247461
EST:     GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG                         GTTGAGGCTCCAAAGAAAAAGGTTAAGAAAATGAACATTCCTGTGGTGGAG
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGATGCTAATTCCAAGGCAACTGCTGATGCCCCTGGGTCCGAAAATGGGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtgataggaaaatttaagcatatgaatggaatgtttgtgtgtcattggtcaacttttagatgtgatttttctatttttggtatttagagcttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT