1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAAGATGCTAATTCCAAGGCAACTGCTGATGCCCCTGGGTCCGAAAATGGGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtgataggaaaatttaagcatatgaatggaatgtttgtgtgtcattggtcaacttttagatgtgatttttctatttttggtatttagagcttg...
species | Glycine max |
transcript | GLYMA15G01750.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG GCTGAGGCTCCAAAGAAAAA-GTTAAGAAAATAAACATTCCTGTGGTGGAGEST: gi|19346354|gb|BM891234.1|BM891234
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG GTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAGEST: gi|193402944|gb|FK366034.1|FK366034
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG GTTGAGGCTCCAAAGAAAAA-GTTAAGAAAATEST: gi|5770361|gb|AI973535.1|AI973535
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAAT
EST: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG GTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAGEST: gi|105634312|gb|DW247461.1|DW247461
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
EST: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAG GTTGAGGCTCCAAAGAAAAAGGTTAAGAAAATGAACATTCCTGTGGTGGAG
genomic: GGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtg ... ctcataacagGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGATGCTAATTCCAAGGCAACTGCTGATGCCCCTGGGTCCGAAAATGGGACCCCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGgtaaatggtgataggaaaatttaagcatatgaatggaatgtttgtgtgtcattggtcaacttttagatgtgatttttctatttttggtatttagagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT