Sequence
atgc intronic sequence ATGC exonic sequenceAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtcaaccaactctctgctttctattttattttatactacttcacttcacctcggatactttttatttcag
Basic information
species | Glycine max |
transcript | GLYMA15G00770.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g09060.1 (Oryza sativa), 5'ss of exon 5
AGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaag--tgtcaaccaactctctgctttctattttattttatac---tacttcacttcacctcggatact----ttttatttcag---------------
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AACGACTTGACCAAGATCCTGGAGGCATTCTTACAACAATATGCAACCATTCTTTCCACTATTCGTGCATGTCAAAGTGGGCAGACTCTTCGTGCCCAgtaagatcttaagacaactcacttactacaggtgttttttatatatatatattagtttactaagggcatcatcatactgttctatcaacataacttttgc
upper sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G26000.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtcaaccaactctc-tgctttct----------attttattttatactacttcacttcacctcggatactttttattt-cag
|| |||| || || ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||| ||||||||||||| || ||||| || | | || |||| | | ||| |||| ||| | ||| | | | ||||||||| |||
AGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAgtaagattcttgtcattttcatgctctttcaaagaaaatattcagtttttctttacatatctttatgggtgttgttttttattttcag
upper sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 5
AGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtg--tcaaccaactctctgctttctattttattttatactacttcactt---cacctcggatactttttatttcag-------------------
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AAAGACTAGACCAAGACATCAGTGGGATTCTTACTACTATATGCAATCATTCCTTCCACTGCTCTTGTATATCAAAATGGACAGATTCTTCTTGTCCGgtgagtgattttggtaattctctctctctctctctctctctcactcacttacatgtgcgtgtgtgttcctatctgttttcatagctctgactggaattgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136317|gb|BU926827.1|BU926827EST: ATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCT GTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGT
genomic: ATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtca ... tttatttcagGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtcaaccaactctctgctttctattttattttatactacttcacttcacctcggatactttttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT