Sequence
atgc intronic sequence ATGC exonic sequenceGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttttgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc...
Basic information
species | Glycine max |
transcript | GLYMA14G40430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 5
lower sequence: AC195874.2_FGT002 (Zea mays), 5'ss of exon 5
GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttttgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattcca-ggcatagttgcc
|| || || ||||| |||||||| ||||| || || || ||||||||||||||||| ||||||| ||| || || | || || || | ||| | | || || | | | | | | | | || |||| |
GTTTACCTGATACTAGATGAATTTATTCTTGCTGGGGAGCTGCAAGAAACAAGCAAAAAGgtaacataattttctgtcttttttgtagtattttttgccagaaccaac-agtatcatacatatacagtttctgtgtatgataaatgtatgtcacagtttct
upper sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 5
GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttt----tgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc
|| ||||| ||||||||||| |||||||| || || || || || ||||||||||||||||| | || || | || || ||| | | | || || | ||| |||| || | |||| || || | ||
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctgttgtgtgtgctctgttgttttggttttctttttttacttttttattttttattttttttagt----ctgtctttttgtttttgtttttt
upper sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttttgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc
|| |||||||||||||| ||||||||||| || || || || |||||||||||||| ||||| ||||| |||| ||||| | || || ||| | | | | | | | || | || | || | | |
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagtttt---ttactcatttgttgaca--ttgtaaagtcgaggattgagcctgagactg---attttccctgtaacttgcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33388601|gb|CA851808.1|CA851808EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GGGAACAGGGGAGGATTGCTTGGGCACATGGACTCAATGCAGAAGAGTCAT
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... tgtgatgcagGGGAACAGGGGAGGATTGCTTGGGCACATGGACTCAATGCAGAAGAGTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttttgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG