Sequence
atgc intronic sequence ATGC exonic sequenceAAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTGgtacgtatgttgtggacattattgctgaagtaatttttgcttgtgatgtggttgggaatatgttaattggagctgtgtgttaattcag
Basic information
species | Glycine max |
transcript | GLYMA14G40320.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G40320.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 5
AAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTGgtacgtatgttgtggac--attattgctgaagtaattt----ttgcttgtgatgtggttggga--atatgttaattggagctgtgtgttaattcag---------------------------------------------------
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AAGGAGAAGAAGATTCTCTCCATTCGGGATAGGGGTATTGGTATGACCAAGGAAGATCTCATTAAGAACCTTGGGACCATTGCCAAATCTGGAACTTCAGgtattactcctttgtactgatttctcttaaagttatgtgtattctcttgctaaaactttagtattatctatttgtttgtaaagagaattttaccaagtgccatttaacttaaacttgagtgataccaattccttgaaatttttgcag
upper sequence: GLYMA14G40320.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 5
AAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTGgtacgtatgttgtgga-----cattat----tgctgaagtaatttttg---cttgtgatgtggttgggaat---atgttaattggagctgtgtgttaattcag
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AAGGAAAAGAAAATCCTGTCAATTCGTGATAGAGGTATAGGTATGACAAAGGATGATTTAATCAAGAACTTAGGAACAATCGCAAAATCTGGAACGTCAGgtatctttattttgcaatgtctaatatcttgttctgaaatgaattctgaagtttggggtttaatgaattattgaatattaatttatattttctttta-tatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193378478|gb|FK343783.1|FK343783EST: TTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTG CATTTGTTGAGAAGATGCAAACAAGTGGAGATCTCAATCTGATTGGGCAGT
genomic: TTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTGgtacgtatgt ... gttaattcagCATTTGTTGAGAAGATGCAAACAAGTGGAGATCTCAATCTGATTGGGCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGAAAAGAAAATTCTCTCAATTCGAGACAGAGGTATCGGTATGACGAAGGAGGATTTGATAAAGAATTTGGGGACAATAGCGAAATCTGGAACTTCTGgtacgtatgttgtggacattattgctgaagtaatttttgcttgtgatgtggttgggaatatgttaattggagctgtgtgttaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA