Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCTGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTAAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattttgtggcattttttcttttccttttgtttaacttgagatggatttttactcgagcaatatcaactatatataatagtacctttttcgaatttgttctaccttgattacaaatgcctgatattattttcttcgttttctgtag
Basic information
species | Glycine max |
transcript | GLYMA14G37780.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G37780.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G125140_T01 (Zea mays), 5'ss of exon 7
AGGCCTGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTAAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattttgtggcattttttcttttccttttgtttaacttgagatggatttttactcgagcaatatcaactatatataa-tagtacctttttcgaatttgttctaccttgattacaaatgcctgatattattttcttcgttttctgtag
| || ||||| | || || | ||| | || ||||| ||||||| || ||| ||||||||||| | || ||||||||||| |||||||||||||||||| | || || | | ||| | | | ||| | | | | ||| || | || | | ||| | | || | | ||| ||
AAGCGAGGTGGTCCGCTAGCTCATGAATTGGCTCGGCATCCTGTTGTCCTCAAGATCAATGACTGGATTTTTTGTCATGGTGGCCTTCTTCCTCACCATGgtgagaccctt----cacctctccttggcatccttgttacccttggcaatttgcatacgtgatctcagtctaaaacataaatctggttcaaggtcagaacctgc------------------------------------------------
upper sequence: GLYMA14G37780.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 5
AGGCCTGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTAAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattttg----tggcattttttcttttccttttgtttaacttgagatggatttttactcgagcaatatcaactatatataatagtacctttttcgaatttgttctaccttgattacaaatgcctgatattattttcttcgttttctgtag
|| || || || || | ||| | ||||||||| | ||||||||||| || || || |||||||||| || ||||||||||| ||||||||||||||||||||| || | || ||||| | || || ||||| | || ||| || | | | || | |||| | | || | | || |
AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttct-tgtttgaaatgcctgataggag--tgttggtacttccacag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151406015|gb|EV275830.1|EV275830EST: AAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATG TTGCATATGGCTTAGAGAGGATGAATAAAGAAGTGTCTGAGTGGATGAGAG
genomic: AAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattt ... ttttctgtagTTGCATATGGCTTAGAGAGGATGAATAAAGAAGTGTCTGAGTGGATGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCTGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTAAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattttgtggcattttttcttttccttttgtttaacttgagatggatttttactcgagcaatatcaactatatataatagtacctttttcgaatttgttctaccttgattacaaatgcctgatattattttcttcgttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA