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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTATACTGTGGCCATGAGgtaaaaatctccatccatactgaaaaaaaaattctatgggagtgtcattgatgattgatcttataagtataaatgatgaatgggattaagccacaaaact...

Basic information

species Glycine max
transcript GLYMA14G36610.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36610.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 4
TGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTATACTGTGGCCATGAGgtaaaaa-----tctccatccatactgaaaaaaaaattctatgggagtg--tcattgatgattgatcttataagtataaatgatgaatgggattaagccacaaaact
|||||| |||||||| ||  ||||||| || ||||||||||| |||| ||| ||||| | |||  | ||||||||||| ||||| |||||||| ||||||||| ||      | | ||     | | |  |  ||  |  |||  ||||   ||||||   |  ||  |  | ||||| |   | | || |  |             
TGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATCAGTCCCTTATTGTTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctcttttttcagtttcattaaggaggaacctgaatgctagtggaccattgaacctgtatggtggatgtatataaagtaactgtgtctcccttt-------

upper sequence: GLYMA14G36610.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 5'ss of exon 5
TGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTATACTGTGGCCATGAGgtaaaaatctccatc-catactgaaaaaaaaattctatgggagt-gtcattgatgattgatcttataagtataaatgatgaatgggattaagccacaaaact
|||||||||||||||||| || ||||||||||||||||| || ||   ||||||| | || ||||| |||||| ||||| ||||||||||||||||||||||||||   | | |   | | | |      |  |   ||| | | | || |      |  | || | | |||   || |  | |     |||          
TGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTATACTGTGGCCATGAGgtaaaatgattcttaatacattcattttggagattcctggaattcgacaataccctctagttttctcattattgttgtttgacgaagaaaagtattgtgg--