Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAGgtaaaattcagatgattctaattttgtttatttgacaaaagcagttcatcatctgatcttgttttcttctgaaacag

Basic information

species Glycine max
transcript GLYMA14G36070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
GGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAGgtaaaattcagatgattctaattttgtttatttgacaaaagcagttcatcatctgatcttgttttcttctgaaacag
     | | |||||||    |||||||||||| ||||| ||||||||||||||  | |||||||| ||||||||||||||||| ||||||  |||     |||   | ||  ||||||     | |        |  |||||||   |     || ||||||||
---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgattggtgagat---atttaagtttatccattatatatctcatagtatctgatg--gaacctttttgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397574|gb|AI496571.1|AI496571
EST:     CGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAG                         ATAGGTAAAATAGTTGATGAAGAACTTAGTGAGCAAG
genomic: CGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAGgtaaaattca ... tctgaaacagATAGGTAAAATAGTTGATGAAGAACTTAGTGAGCAAG