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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGGCAACAAGTACCTATGTTTGGGAAATCAGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGgttagtaccaaatatctatggatattattgcaatcatgcaatggggctttcaagcactgtttattgatttaggattttgtagtacattgattgccattgc...

Basic information

species Glycine max
transcript GLYMA14G31940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G31940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 5'ss of exon 6
GAACCTGGCAACAAGTACCTATGTTTGGGAAATCAGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGgttagtaccaaatatctatggatattattgc--aatcatgcaatggggctttcaagcactgtttattgatttaggattttgtagtacattgattgccattgc
 |||||   |||||| |||||||| ||||||||  | |||||||| ||||||||  | ||||| ||||| ||||||||||| || ||||||||||||||||||||| |  ||||| | |   ||||| | |  | | ||   ||      |  ||||| ||     || | |   | |    ||||   |   |  ||    
AAACCTCAAAACAAGCACCTATGTCTGGGAAATTTGCTTTGCAGTGTTCATTTCCATCTCTGGCTTGGTTTTATTTTCATTTCTTATTGGAAATATGCAGgttagtgctgaatatttctatttattagttcttagttatttgatactatgtgtaagca-tgagagatgctgtgtaaatcataagtaggatatatcacacac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425311|gb|FK387828.1|FK387828
EST:     TTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAG                         ACATATTTGCAGTCAACAACCACTAGATTGGAGGAGATGAGAGTAAAAAGG
genomic: TTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGgttagtacca ... tttgaaacagACATATTTGCAGTCAACAACCACTAGATTGGAGGAGATGAGAGTAAAAAGG