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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccactg...

Basic information

species Glycine max
transcript GLYMA14G24270.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 5
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagcttacaaattctgattctcttagcagtttgatctttagattttt-----agatgctgctgttgtca--atttcccatctgagtacttgtac---aagccactg--------------------------------------------
||| | |||||| | || ||||| || || |||||||| || || || || || || |||||| | ||||| ||||||||||||||||| |||||||||| ||     | || ||  ||||     | |  |  ||   |||||     | ||   |||  |  ||  || | ||   || | |||| |     |||    ||                                            
GAAGCTGAGGAACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTgtaagttttgttctcctcatcttcttcttcttcttcttcttctttttttctgtcacatctggcttcttacagaatatacctcatgtgcacttatcttctaaggatatgtattatataagatagtaacattctttcatggtcatgttgtccag

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 5
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtac-ttgtacaagccactg
||| | ||||||||||| ||||| || || |||||||| || |||||||| || ||||||||| ||||||| |||||||| ||||| ||  ||||||||| |  ||  ||||  |  ||||  |       |  ||  ||    |  |  | ||     |||  | ||||     |   |||||||        
GAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTgtaagttctcat-ttcttctcttcttttccacacatttgtt--atccaaaattagttcttaaaacaaacttccatggtgatgtgttgtacag-------

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctta-caaattctgattctcttagca-gtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccac-tg----
||||| |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||  |    |||| ||      |||      ||  |||  || | || |     |  | |  ||    ||  |   || |  |  || |||  ||    
GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttctcttgctctgctttctactgcatagaaaataattatgttctgagct-----tagtatttatccatcaatttgataataatggaatccaagtgtgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079161|gb|GD877029.1|GD877029
EST:     GGCTGGGGAGGACATGTCTATGTTGTT                       
genomic: GGCTGGGGAGGACATGTCTA---TGTTgtgtaagctt ... tcttctgc
EST: gi|193491426|gb|FK457391.1|FK457391
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208092438|gb|GD887515.1|GD887515
EST:     GAGGACATGTCTATGTTGT                        
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207772332|gb|GD746509.1|GD746509
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208340964|gb|GE134572.1|GE134572
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193403217|gb|FK367651.1|FK367651
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207790898|gb|GD759683.1|GD759683
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193645653|gb|FK593841.1|FK593841
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208332813|gb|GE129092.1|GE129092
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208046884|gb|GD846893.1|GD846893
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|26047837|gb|CA784494.1|CA784494
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|26047837|gb|CA784494.1|CA784494
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|26047837|gb|CA784494.1|CA784494
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193448400|gb|FK411935.1|FK411935
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208030677|gb|GD831165.1|GD831165
EST:     GAGGACATGTCTATGTTGT                        
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193326373|gb|FK289370.1|FK289370
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193610047|gb|FK562489.1|FK562489
EST:     TGGGGAGGACATGTCTATGTTGT                        
genomic: TGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207762451|gb|GD731646.1|GD731646
EST:     TGGGGAGGACATGTCTATGTTGT                        
genomic: TGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|208094289|gb|GD894014.1|GD894014
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208292946|gb|GE094726.1|GE094726
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208204407|gb|GE007814.1|GE007814
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                        
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207841675|gb|GD817143.1|GD817143
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193678201|gb|FK615875.1|FK615875
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208063121|gb|GD861023.1|GD861023
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|6914860|gb|AW396390.1|AW396390
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                        
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|208263328|gb|GE064848.1|GE064848
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207692051|gb|GD676054.1|GD676054
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208035018|gb|GD836888.1|GD836888
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208155706|gb|GD958467.1|GD958467
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                        
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|16349184|gb|BI974779.1|BI974779
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTTTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|16349184|gb|BI974779.1|BI974779
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTTTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|16349184|gb|BI974779.1|BI974779
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTTTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193412574|gb|FK377805.1|FK377805
EST:     GGCT-GGGAGGTCATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193589791|gb|FK545155.1|FK545155
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|192318541|gb|FK011365.1|FK011365
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|192318541|gb|FK011365.1|FK011365
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|192318541|gb|FK011365.1|FK011365
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|207811930|gb|GD783515.1|GD783515
EST:     GAGGACATGTCTATGTTGT                        
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|207718194|gb|GD698800.1|GD698800
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207697501|gb|GD679488.1|GD679488
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193399851|gb|FK369998.1|FK369998
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193338769|gb|FK303094.1|FK303094
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208128199|gb|GD922235.1|GD922235
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193412804|gb|FK378693.1|FK378693
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208124568|gb|GD925106.1|GD925106
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193638212|gb|FK586706.1|FK586706
EST:     GGCTGGGGAGGACTATTGTTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGAC-A-TG-TCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208317033|gb|GE111488.1|GE111488
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193310974|gb|FK276018.1|FK276018
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193700340|gb|FK635907.1|FK635907
EST:     GGCTGGGGAGGACTATTGTCTTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGAC-A-TGTC-TATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|193625873|gb|FK573997.1|FK573997
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208108733|gb|GD907151.1|GD907151
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207839105|gb|GD809522.1|GD809522
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208258552|gb|GE052927.1|GE052927
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGAGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGAGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGAGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193418208|gb|FK385120.1|FK385120
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193378370|gb|FK345075.1|FK345075
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207746428|gb|GD718293.1|GD718293
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|207803296|gb|GD775769.1|GD775769
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193360408|gb|FK328062.1|FK328062
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|193441805|gb|FK407742.1|FK407742
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193410304|gb|FK380211.1|FK380211
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7233789|gb|AW569132.1|AW569132
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7233789|gb|AW569132.1|AW569132
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7233789|gb|AW569132.1|AW569132
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193730583|gb|FK663541.1|FK663541
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|208121202|gb|GD920311.1|GD920311
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193710719|gb|FK647309.1|FK647309
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|208275918|gb|GE080260.1|GE080260
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193653839|gb|FK595651.1|FK595651
EST:     TGGGGAGGACATGTCTATGTTGT                        
genomic: TGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|207726685|gb|GD702441.1|GD702441
EST:     GGCTGGGGAGGACATGTCTATGTTAT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193322184|gb|FK284948.1|FK284948
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|192318542|gb|FK011366.1|FK011366
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                        
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193548738|gb|FK505829.1|FK505829
EST:     GGCTGGGGAGGACATGTCTATGTTGT                        
genomic: GGCTGGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193307926|gb|FK273446.1|FK273446
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca
EST: gi|193353511|gb|FK322359.1|FK322359
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|16104779|gb|BI892519.1|BI892519
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|16104779|gb|BI892519.1|BI892519
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|16104779|gb|BI892519.1|BI892519
EST:     CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT                         G
genomic: CATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagctt ... tcttctgcag-
EST: gi|193593468|gb|FK547078.1|FK547078
EST:     GGGGAGGACATGTCTATGTTGT                        
genomic: GGGGAGGACATGTCTATG-T-Tgtgtaagctt ... tcttctgca

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTgtgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccactg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA