Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccactggc...

Basic information

species Glycine max
transcript GLYMA14G24270.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttacaaattctgattctcttagcagt-ttgatctttagatttttagatgctgctgttgtc------aatttcccatctgagtacttgta--caagccactggc-------------------------------------------
||| | |||||| | || ||||| || || |||||||| || || || || || || |||||| | ||||| ||||||||||||||||| |||||||||| ||     | || ||  ||||     | ||  ||||    ||||  |   |  |||   ||      ||| | ||   || | |||| |   | |   |   |                                            
GAAGCTGAGGAACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTgtaagttttgttctcctcatcttcttcttcttcttcttcttctttttttctgtcacatctggcttcttacagaatatacctcatgtgcacttatcttctaaggatatgtattatataagatagtaacattctttcatggtcatgttgtccag

upper sequence: GLYMA14G24270.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtac-ttgtacaagccactggc
||| | ||||||||||| ||||| || || |||||||| || |||||||| || ||||||||| ||||||| |||||||| ||||| ||  ||||||||| |  ||  ||||  |  ||||  |       |  |||  |    |  |  | ||     |||  | ||||     |   |||||||          
GAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTgtaagttctcat-ttcttctcttcttttccacacatttgtta--tccaaaattagttcttaaaacaaacttccatggtgatgtgttgtacag---------

upper sequence: GLYMA14G24270.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 6
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagctta-caaattctgattctcttagca-gtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccactggc---
||||| |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||  |    |||| ||      |||      ||  |||  || | || |     |  | |  ||    ||  |   || |  |  || |||   |    
GAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttctcttgctctgctttctactgcatagaaaataattatgttctgagct-----tagtatttatccatcaatttgataataatggaatccaagtgtgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318541|gb|FK011365.1|FK011365
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAA-TGAAGTGA
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGA
EST: gi|192318542|gb|FK011366.1|FK011366
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193645653|gb|FK593841.1|FK593841
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|193307926|gb|FK273446.1|FK273446
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193344684|gb|FK310764.1|FK310764
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208108733|gb|GD907151.1|GD907151
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207746428|gb|GD718293.1|GD718293
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207772332|gb|GD746509.1|GD746509
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGAGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAAGAAAGGATTTTGGAAGGGAAG
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTG-AAGGGAAG
EST: gi|16349184|gb|BI974779.1|BI974779
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTTTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207839105|gb|GD809522.1|GD809522
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACG-CCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208035018|gb|GD836888.1|GD836888
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193658080|gb|FK601995.1|FK601995
EST:     GGCTGGGGAGGACATGTCTATTGTTTGTT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTA-TG-TTG-Tgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193593468|gb|FK547078.1|FK547078
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207803296|gb|GD775769.1|GD775769
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|193548738|gb|FK505829.1|FK505829
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208317033|gb|GE111488.1|GE111488
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193638212|gb|FK586706.1|FK586706
EST:     GGCTGGGGAGGACTATTGTTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGAC-A-TG-TCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208258552|gb|GE052927.1|GE052927
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208263328|gb|GE064848.1|GE064848
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208340964|gb|GE134572.1|GE134572
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193418208|gb|FK385120.1|FK385120
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208046884|gb|GD846893.1|GD846893
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193678201|gb|FK615875.1|FK615875
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193710719|gb|FK647309.1|FK647309
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208092438|gb|GD887515.1|GD887515
EST:     GAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207717795|gb|GD698709.1|GD698709
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193410304|gb|FK380211.1|FK380211
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193353511|gb|FK322359.1|FK322359
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208275918|gb|GE080260.1|GE080260
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193378370|gb|FK345075.1|FK345075
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207726685|gb|GD702441.1|GD702441
EST:     GGCTGGGGAGGACATGTCTATGTTAT                         CACGCCAACCGAGGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208292946|gb|GE094726.1|GE094726
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208155706|gb|GD958467.1|GD958467
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207697501|gb|GD679488.1|GD679488
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193310974|gb|FK276018.1|FK276018
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193350138|gb|FK317800.1|FK317800
EST:     GAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|193625873|gb|FK573997.1|FK573997
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193589791|gb|FK545155.1|FK545155
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208332813|gb|GE129092.1|GE129092
EST:     TGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193653839|gb|FK595651.1|FK595651
EST:     TGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193441805|gb|FK407742.1|FK407742
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|16104779|gb|BI892519.1|BI892519
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193338769|gb|FK303094.1|FK303094
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193403217|gb|FK367651.1|FK367651
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTCTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208204407|gb|GE007814.1|GE007814
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|193412804|gb|FK378693.1|FK378693
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207762451|gb|GD731646.1|GD731646
EST:     TGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAAT
genomic: TGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193610047|gb|FK562489.1|FK562489
EST:     TGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193491426|gb|FK457391.1|FK457391
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTG-AGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|208063121|gb|GD861023.1|GD861023
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|193412574|gb|FK377805.1|FK377805
EST:     GGCT-GGGAGGTCATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193399851|gb|FK369998.1|FK369998
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|7233789|gb|AW569132.1|AW569132
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208305679|gb|GE103982.1|GE103982
EST:     GGGGAGGACATTGTTCTTATTGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGGGAGGACA-TG-TC-TA-TGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|193585701|gb|FK538525.1|FK538525
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTCTTGAAGGGA-GGATGGAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATT-TTGAAGGGAAGGATGGAT
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
EST: gi|208121202|gb|GD920311.1|GD920311
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
EST: gi|207790898|gb|GD759683.1|GD759683
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207811930|gb|GD783515.1|GD783515
EST:     GAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207704536|gb|GD684161.1|GD684161
EST:     GGCTGGGGAGGACATGTCTATGTTAT                         CACGCCAACCCGAGGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAA-ATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208030677|gb|GD831165.1|GD831165
EST:     GAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|208094289|gb|GD894014.1|GD894014
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|208124568|gb|GD925106.1|GD925106
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGAT
EST: gi|207718194|gb|GD698800.1|GD698800
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193322184|gb|FK284948.1|FK284948
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|207841675|gb|GD817143.1|GD817143
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGA-TTTTGAAGGGAAGGATGGATTGAA
EST: gi|208128199|gb|GD922235.1|GD922235
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193326373|gb|FK289370.1|FK289370
EST:     GGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193448400|gb|FK411935.1|FK411935
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193730583|gb|FK663541.1|FK663541
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193421169|gb|FK391386.1|FK391386
EST:     GGCTGGGGAGGACTATTGTCTATGTTGT                         CACGACCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGAC-A-TGTCTATGTTGTgtaagcttac ... tcttctgcagCACG-CCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|6914860|gb|AW396390.1|AW396390
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193360408|gb|FK328062.1|FK328062
EST:     GAGGACATGTCTATGCTGT                         CACGCCAAATGAAGTGAAGGAAAGGA-TTTGAAGGGAAGGATGGATTGAAT
genomic: GAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|207692051|gb|GD676054.1|GD676054
EST:     GGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: GGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
EST: gi|193700340|gb|FK635907.1|FK635907
EST:     GGCTGGGGAGGACTATTGTCTTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
genomic: GGCTGGGGAGGAC-A-TGTC-TATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAA
EST: gi|208079161|gb|GD877029.1|GD877029
EST:     GGCTGGGGAGGACATGTCTATGTTGTT                         CTACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGA
genomic: GGCTGGGGAGGACATGTCTATGTTG-Tgtaagcttac ... tcttctgcagC-ACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGA
EST: gi|26047837|gb|CA784494.1|CA784494
EST:     TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT                         CACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT
genomic: TCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttac ... tcttctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTgtaagcttacaaattctgattctcttagcagtttgatctttagatttttagatgctgctgttgtcaatttcccatctgagtacttgtacaagccactggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA