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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag

Basic information

species Glycine max
transcript GLYMA14G23860.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagc-ctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag
|||||||  ||||||||||| |||||||| ||||| ||| ||||||| ||||| || ||||| ||||| |  |||||| | |||||||| || | ||||||| ||         ||| ||   | | | |   |    | | ||     | |||||      || | ||| |   | | |     ||| |  |||| |||  | | ||||                                                
GATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTCTTCATCTTGGCTCAGTTAGTGAGGGTAGAATCCAATGCCCTTTCCATGgtaag---------aaaaaagaaactttatatgaaatttcattttggcacgcttctgctgtttttacaatctgattttcaaa--gcatcagctagcactatggctatatga-----------------------------------------------

upper sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagt-----agtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag
|| || | |||||| ||||| |||||||| ||||| ||| | || || || ||||| ||||||||||| ||||||||| | ||||| || || ||||||||| |||     | |  |||||  |  | |     ||   |   |  | | ||| |   | || | |  ||    |   ||| |  |||  | || | |    ||                                                          
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctactgtctgaattaggtcagagattctcggggtt--actgtat-cttgttttcagaagtgcgcctacttgttttgtttaccctgtc-tgaatta----------------------------------------------------------

upper sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcc-tagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag
|| ||||| || |||||||| | ||| || ||||| ||  |||| ||||||||  | |||||  |||| |||||||| ||||| |||||||| ||||||||||||||     |     |    |  ||||   || |||   |  |     |  |  | | |  ||||  ||||                                                                                    
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtgagaaaccatatcttattaaatgtgattttgtag-----------------------------------------------------------------------------------

upper sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcctagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag
|||||||| ||||||||||| |  |||||||| || ||  |||| || ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||       ||  |||| |          ||||    |||  ||   ||  | |||       ||| |    | | ||   |   ||||   || | |   || |    | |   | | ||     ||| |||    |||| || |  ||||
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataa----------gcaaaagtttacctgt-tttgctaataagaacagatg-acaaatcaattagtaatgcataaagtaaaaa---atatttgtttg--ctcatgtgg---aaatttttgtgatggatgaacttcag