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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagatattacttggtttttttatctagattttaatagattcctgtattatacaaag

Basic information

species Glycine max
transcript GLYMA14G21790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21790.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g53720.1 (Oryza sativa), 5'ss of exon 5
---------------ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagat-attacttggtttttttatctagattt--taatagattcctgtattatacaaag
                    || | ||  || || || |||||||| | |||||| |||| ||||||||||||||||||||||||||   |  || |   || |  |   || || | ||||       | | | || ||||   | |    |  | || | || ||||
GGCAAGTGACAAGTGGTCTAAAAAGAGCTGGAAGCCTAAGATTTTATAGACCAAAATTCAAATATATCTTCTGTGATATGGATGgta---tatcattt--gctctttgcatatatcactactctagacatgtgtttatatttaccagtgatattttttaatttaaaaag

upper sequence: GLYMA14G21790.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G836674_T02 (Zea mays), 5'ss of exon 5
--------------------------ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagatattacttggtttttttatctagattttaatagattcctgtattatacaaag
                          ||  ||||||||  ||||| |||||||||||||||||||| |||| |||||| || |||||||||||||||| |  |  | |     |   ||| || |   || ||| | |  || || |  |  || |   ||||    ||  ||||  
AATGTTTACAGGACAAGTGACAAATGACCTGAAGAAAGCTGGCAGCCTTAGATTTTACAAACCAAAATTCAAATATATTTTTTGTGATATGGATGgtatgtctttactctttgaacatctttacagtctatttgctatagttttc-acttactattgttttccccctttgaacaag-

upper sequence: GLYMA14G21790.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G25870.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagatattactt--ggtttttttatctagattttaatagattcctgt--attatacaaag
|||||||| |||  |   | || ||||| |||||||||||||||   ||||| ||||||||||||||||||||| || |  |     | | | ||||| | ||  ||  |||||| ||  ||   |  |   |  ||  |||  | | ||  |  
ACAGGAAGGAAGGGGATGGCCTAAGATTGTACAAACCAAAGTTCTCCTATATATTCTGTGATATGGATGgtaaggttact-tatttaataatgtgtagttgtttgtttcggttttcttcgctttctcatgggattttgatgtgaactctattag-

upper sequence: GLYMA14G21790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g00450.t01 (Vitis vinifera), 5'ss of exon 5
ACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgcagtgaagcacactctgtagatattacttggtttttttatctagattttaatagattcctgtattatacaaag
||||||| |||||||| |||||  | || || |||||||||||||| ||||||||||||||| |||||||| |||   |  |  |  | ||  | ||   ||  | |   || |||  | || || | || | ||| | | | | || |  
ACAGGAAAAAAGAAGGTAGTCTACGTTTCTATAAACCAAAGTTCAGCTATATCTTCTGTGATGTGGATGgtgagacaactcttgaa-atacctt-taaccatcccattagttctttcaccagcttatcatgg-ttcttttttaacactag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181259|gb|BG352599.1|BG352599
EST:     CAAAGTTCAGATATATCTTCTGTGATATGGATG                         GAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTT
genomic: CAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgc ... ttatacaaagGAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTT
EST: gi|8284308|gb|BE021867.1|BE021867
EST:     TCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATG                         GAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTT
genomic: TCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGgtaagattgc ... ttatacaaagGAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTT