Sequence
atgc intronic sequence ATGC exonic sequenceTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccatcaaaactagtaatttgtacaacaaaaaatgtaggtatctatcacaatttttttcgttgtaccacttaccattgtttgattattacattttttgtgaacattgcaccattcttaatttgaaaagaagcaatgcag
Basic information
species | Glycine max |
transcript | GLYMA14G13750.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g43860.1 (Oryza sativa), 5'ss of exon 5
TGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccatcaaaactagtaatttgtacaacaaaaaatgtaggtatctatcacaatttttttcgttgtaccacttaccattgtttgattattacattttttgtgaacattgcaccattcttaatttgaaaagaagcaatgcag
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TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGgtatcgtgtcgtggact---------tctaacagaaatt-------ccttttaca-tatttttggttt--ccattttcctgtctctgtctgtt-tatgcctagaaaaag-----------------------------------
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g43860.3 (Oryza sativa), 5'ss of exon 5
TGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccatcaaaactagtaatttgtacaacaaaaaatgtaggtatctatcacaatttttttcgttgtaccacttaccattgtttgattattacattttttgtgaacattgcaccattcttaatttgaaaagaagcaatgcag
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TGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCACAGCAATCCT---GCTTCATCCTCATCAGA---CAAAAGCAAGAG------------AAAAAGgtatcgtgt-----------cgtggacttctaacagaaattcctt-----------ttacatatttttggtttccat-tttcctgtctctgtctgtttatgcctag---aaaaagaagcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193545150|gb|FK499457.1|FK499457EST: TGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAG GTGATAACTGATTATCGTTGCATGTAAATGGAG
genomic: TGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGTAAATGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGgtattcccatcaaaactagtaatttgtacaacaaaaaatgtaggtatctatcacaatttttttcgttgtaccacttaccattgtttgattattacattttttgtgaacattgcaccattcttaatttgaaaagaagcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA